PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P27270_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 196aa MW: 22591 Da PI: 6.2473

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P27270_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ +ar g++Rt+k+c++rw++yl GSMUA_Achr1P27270_001 15 KGPWTMEEDLILINYITNHGEGVWNNVARSAGLNRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+ ++++++G++ W++Iar ++ gRt++++k++w++ GSMUA_Achr1P27270_001 68 RGNITPEEQHLIMELHARWGNR-WSKIARQLP-GRTDNEIKNFWRT 111 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-25	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.21	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.82E-30	13	109	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	4.78E-10	17	62	No hit	No description
PROSITE profile	PS51294	25.06	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-24	66	118	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-15	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-9	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDKRISNSQE AEVRKGPWTM EEDLILINYI TNHGEGVWNN VARSAGLNRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQHLIM ELHARWGNRW SKIARQLPGR TDNEIKNFWR TRIQKKLKHG 120 EPFGVQNVML TDEASTSTTQ VNTTTDEGAQ PGAYTHMHDE QQTANPDGMI SEFSTESSDN 180 FWTVDDFWSM PSLNGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	12	117	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419837.1	1e-146	PREDICTED: myb-related protein 305-like
Swissprot	P81391	2e-80	MYB05_ANTMA; Myb-related protein 305
TrEMBL	M0S3I4	1e-145	M0S3I4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P27270_001	1e-146	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	5e-75	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]