PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P27200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 333aa MW: 38932.8 Da PI: 4.9457

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P27200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	95.4	6.2e-30	42	154	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT...........XTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks...........kek 77 Fl+k++++++d+ +++++sws ++nsfvv d++ fa ++Lp+yFkh+nf+SFvRQLn+Y +F ++ + + +++ GSMUA_Achr1P27200_001 42 FLTKTFDMVDDPVTDQVVSWSLTSNSFVVRDPHAFAVTLLPRYFKHNNFSSFVRQLNTYlEFIFNANDFLLHLNfscvrkgfrkvDPD 129 9******************999********************************7788888888776668888777665449 PP SEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 78 iweFkhksFkkgkkellekikrkks 102 weF+++ F +g+k+ll++ikr+k GSMUA_Achr1P27200_001 130 RWEFANEGFLRGQKHLLKTIKRRKP 154 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.9E-35	38	152	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.99E-29	38	152	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-46	38	152	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-13	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.4E-27	42	152	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-13	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-13	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDPLPDIVKE EYPETSSYNI EDSFMEPPRP MEGLHEVGPP PFLTKTFDMV DDPVTDQVVS 60 WSLTSNSFVV RDPHAFAVTL LPRYFKHNNF SSFVRQLNTY LEFIFNANDF LLHLNFSCVR 120 KGFRKVDPDR WEFANEGFLR GQKHLLKTIK RRKPPSNPLP RQQSMGSFLE VVKLRQEQQN 180 TRTQLQAMEE RVQSTEQKQQ QTMTFLACAL QNPDFFQQLV QQQEKRKQLE EAISKKRRRP 240 IEAGPWVYEP EFFQLDGLSM EIHGLGRNEE AENKPGEKHE GGYTELNDEF WEALFKERIE 300 EEKGGPEWVE RGEDDDIVVL AEKLGYLTSN SPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-21	40	152	27	129	Heat shock factor protein 1
5d5v_B	5e-21	40	152	27	129	Heat shock factor protein 1
5d5v_D	5e-21	40	152	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	LKTIKRR
2	224	238	KRKQLEEAISKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:16202242}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419759.1	0.0	PREDICTED: heat stress transcription factor A-2c-like
Refseq	XP_009419767.1	0.0	PREDICTED: heat stress transcription factor A-2c-like
Swissprot	Q338B0	1e-108	HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBL	M0S3H7	0.0	M0S3H7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P27200_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	6e-82	heat shock transcription factor A6B

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Singh A, et al. OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.). Cell Stress Chaperones, 2012. 17(2): p. 243-54 [PMID:22147560]