PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 221aa    MW: 24728.3 Da    PI: 8.7576
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY56.61.1e-17262262
                  YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62
                           d++  ++++Cyv+C++Cnt+lav vP + ++ +vtv+CGhC++l  ++ + ++q l+ ++h
  GSMUA_Achr1P27150_001  2 DLVPPTDRLCYVRCTYCNTVLAVGVPCKRVMDTVTVKCGHCSHLSFLSPRATVQSLTPTDH 62
                           77889*************************************9977777777776666655 PP
2YABBY89.31e-2784145102162
                  YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            s+n++e++ + p+ v++PPek+ r+Psaynrf+keeiqrika+ Pdi hreafs+a+knWa 
  GSMUA_Achr1P27150_001  84 SSNSSEQMIQKPRfVMKPPEKKHRMPSAYNRFMKEEIQRIKAAKPDIPHREAFSMASKNWAK 145
                            45555555555555**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.1E-476146IPR006780YABBY protein
SuperFamilySSF470954.97E-895147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-599147IPR009071High mobility group box domain
CDDcd013901.40E-5100148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDLVPPTDRL CYVRCTYCNT VLAVGVPCKR VMDTVTVKCG HCSHLSFLSP RATVQSLTPT  60
DHRMGLQGPC SDCLRGQPSP PSSSSNSSEQ MIQKPRFVMK PPEKKHRMPS AYNRFMKEEI  120
QRIKAAKPDI PHREAFSMAS KNWAKCDPRC STTISTSSDN SSGKSYHSFN KIRDRSIDVD  180
KLLTEGGLES MSNILMQLYG LHEFKITCSS SPGFDNAWKD D
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419736.21e-120PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ04e-77YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0S3H21e-164M0S3H2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27150_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-48YABBY family protein