PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 241aa    MW: 27123.7 Da    PI: 8.4211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr1P26520_001 14 KGAWTKEEDDQLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP
2Myb_DNA-binding61.41.9e-1967111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  GSMUA_Achr1P26520_001  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.305961IPR017930Myb domain
SuperFamilySSF466891.47E-2913108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002494.3E-151461IPR001005SANT/Myb domain
CDDcd001679.15E-111661No hitNo description
PROSITE profilePS5129429.88162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2965116IPR009057Homeodomain-like
SMARTSM007171.4E-1866114IPR001005SANT/Myb domain
PfamPF002497.4E-1867111IPR001005SANT/Myb domain
CDDcd001677.88E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDQLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLSRG  120
VDPVTHRPIN GHGSDTATHF ERKPAAIGFG PDQESDKISS SEESSAWQQR QPKWPDLNLE  180
LCISPPSQQQ QPLEPVDGGG EQPQSLCFSC GAAVGSQKRH KECKCRDLIG LSTGMLDYRN  240
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2458811e-140GU245881.1 Eremochloa ophiuroides P1 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418831.11e-180PREDICTED: myb-related protein 308-like
RefseqXP_018677659.11e-180PREDICTED: myb-related protein 308-like
SwissprotP813931e-102MYB08_ANTMA; Myb-related protein 308
TrEMBLM0S3A91e-178M0S3A9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26520_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-92myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]