PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 282aa    MW: 31637.6 Da    PI: 10.3698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191560147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEde l ++v++ G+++W++I++ ++ gR++k+c++rw + 
  GSMUA_Achr1P26140_001 15 KGPWSPEEDEALRKLVQRNGPRNWSLISKSIP-GRSGKSCRLRWCNQ 60
                           79******************************.***********985 PP
2Myb_DNA-binding574.5e-1869111347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr1P26140_001  69 PFTPEEDETIIRAHRRFGNR-WATIARLLS-GRTDNAVKNHWNST 111
                            89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5381065IPR017930Myb domain
SuperFamilySSF466894.67E-3212108IPR009057Homeodomain-like
SMARTSM007177.2E-171463IPR001005SANT/Myb domain
PfamPF002496.7E-191560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-261668IPR009057Homeodomain-like
CDDcd001674.53E-161759No hitNo description
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129420.53867116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2369115IPR009057Homeodomain-like
PfamPF002494.0E-1569111IPR001005SANT/Myb domain
CDDcd001676.31E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASAGSRSKD LGRIKGPWSP EEDEALRKLV QRNGPRNWSL ISKSIPGRSG KSCRLRWCNQ  60
LSPQVEHRPF TPEEDETIIR AHRRFGNRWA TIARLLSGRT DNAVKNHWNS TLKRRYSASA  120
TAVDGDVSDS SHHSLPMISP VSTASHVYRP VPRTGATSPS PITIKHPLTS LSLSLPGSDP  180
KDTSDGHHSA DNDYSNHKQL ELLPSDERRW HAPFPFDAEF LTVMQEMIRE EVRSYMSSLE  240
KSGMTCAQFP LASDNVRNTV IRRIGVSVTR MEVRFGVNKG LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40141153104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40141153104C-Myb DNA-Binding Domain
1msf_C1e-40141153104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674332.11e-172PREDICTED: transcription factor MYB44-like
SwissprotO231603e-74MYB73_ARATH; Transcription factor MYB73
TrEMBLM0S3710.0M0S371_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-69myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]