PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P25000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 399aa    MW: 43781.4 Da    PI: 6.5809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P25000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-11203245754
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++E++RR+r+ ++fe L++l+P++     +K++ a+i+  ++eYI++L
  GSMUA_Achr1P25000_001 203 KNEKQRRERLGKKFEDLKSLIPNS-----TKPDRASIVADTIEYINEL 245
                            58*********************9.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.376196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8203245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.11E-12204260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-10205249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-10205249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MYQFGSHGRG VGAAGAFGGS SHTATTSYPD LPPPVEDNKG SNSSDLEEKM RLPGFSHDDQ  60
TINDASMGLE LDLHHQFDLE AKQEISTHLM QAGGYPQCFD PATISYSAAF GMPADVFFAE  120
LPPDGLYDPA VHYGPSNPPF MVREVLGSFP HAAGFFAAGS RGSGESYVIG TEDGRGGQLL  180
ESPHVRNKRQ QGAPWGMKQG GLKNEKQRRE RLGKKFEDLK SLIPNSTKPD RASIVADTIE  240
YINELLRTVD ELKILVEKKR RWRERARKTA TGDQAAGDME SSSITPPMDD ADRASKGVLR  300
SSWLQRRSKD TFVDVRIVDD EANIKLTRRK MMNCMLIVAK VLDELHLELL HLSGGNVGYS  360
HIFMINTKIH EGSSVYASAI AKKLIEAMDV SGPTLPASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417499.10.0PREDICTED: transcription factor EAT1-like
TrEMBLM0S2V70.0M0S2V7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P25000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-41bHLH family protein