PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P23990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 330aa MW: 36400.4 Da PI: 6.5115

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P23990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d++ ++G g+W++ ++ g++R++k+c++rw +yl GSMUA_Achr1P23990_001 14 KGPWTPEEDEKLKDYIGKHGQGNWRRLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.7	2.4e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T eE++l++++++ lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr1P23990_001 67 RGEFTDEEEKLILQLHAVLGNK-WSAIATRLP-GRTDNEIKNYWNTN 111 899*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.145	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-16	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.245	66	116	IPR017930	Myb domain
Pfam	PF00249	4.7E-16	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.69E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGRPPCCDEF GLKKGPWTPE EDEKLKDYIG KHGQGNWRRL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGEF TDEEEKLILQ LHAVLGNKWS AIATRLPGRT DNEIKNYWNT NMRKKLLQVG 120 IDPVTHQPRT DLNLLATMPG LLTVANLGSL TSFLDNSLQQ QADAAHLIKL QLVQNLVQLL 180 TCSATPNLDL LRLFAPAAPR NHRPNDVLAL IRQLSSLVIL QSLTPTASRE GLQHLANSLS 240 VGGGEAVAVA PAPADDLSWE STVKDKGCGT ATCIFPTSNS TASLDPVSPE NMSRSETTSL 300 EGSISTSFED WDALNLDDLD NDFGWKEILK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-30	12	116	2	105	C-Myb DNA-Binding Domain
1msf_C	1e-30	12	116	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417383.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	3e-84	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M0S2K6	0.0	M0S2K6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P23990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-84	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]