PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P23420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CO-like

Protein Properties

Length: 335aa MW: 35811.4 Da PI: 7.3361

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P23420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.2	3.3e-08	15	53	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39 r+C+ +++ ++ fC+ ++ +lC C H g H++ GSMUA_Achr1P23420_001 15 RRCDSCKSGPALVFCRADEAYLCGACDARVH-GtgarHER 53 79****99****************999.54777876 PP
2	zf-B_box	26.1	1.8e-08	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + lC +C +H+ H++ p GSMUA_Achr1P23420_001 54 VWVCEVCEQAPASVTCKADAAALCVTCDADIHSAnplalrHERAP 98 689*****************************6688888888766 PP
3	CCT	71	2.9e-24	261	305	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrFvk++e GSMUA_Achr1P23420_001 261 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFVKRSE 305 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.424	12	56	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-7	12	56	IPR000315	B-box-type zinc finger
CDD	cd00021	2.24E-9	15	56	No hit	No description
Pfam	PF00643	2.7E-6	15	53	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.68	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-6	53	98	IPR000315	B-box-type zinc finger
CDD	cd00021	3.26E-9	55	99	No hit	No description
SMART	SM00336	5.4E-9	57	99	IPR000315	B-box-type zinc finger
Pfam	PF06203	2.7E-18	261	303	IPR010402	CCT domain
PROSITE profile	PS51017	16.916	261	303	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVSAKGGYWS GIGARRCDSC KSGPALVFCR ADEAYLCGAC DARVHGTGAR HERVWVCEVC 60 EQAPASVTCK ADAAALCVTC DADIHSANPL ALRHERAPVV PFLEPLRPRS AATGFPFGVA 120 AADEEASEAP SWLLPIPCAK GKSMDHFFSD VDPYLNLEYA TSIDARLQQT DGVVPVDAKD 180 ASRDGGAPPP GPFLPIDGTF ELDFVGSKPS YSPYTADSLS HSVSSLEFGV VPDGSGGIAK 240 GTKADATGPN YGGGGGRAAD REARVMRYRE KRKNRRFEKT IRYASRKAYA ETRPRIKGRF 300 VKRSEIEPEE VVRTYSPAVV AALMADPGYG VVPSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666331	1e-45	KM666331.1 Ananas bracteatus clone 51620b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414699.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9FHH8	4e-89	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	M0S2E9	0.0	M0S2E9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P23420_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	3e-89	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]