PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 379aa    MW: 42419.2 Da    PI: 8.4205
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.95e-2578121144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg+srsrk++e
  GSMUA_Achr1P21940_001  78 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKSRSRKPVE 121
                            79***************************************997 PP
2QLQ55.51.8e-191044236
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           +FTa+Q+q+L+ Q+l++Ky++++ PvPp+L++ i+
  GSMUA_Achr1P21940_001 10 PFTASQWQELELQALIFKYMVSGIPVPPDLILCIR 44
                           9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.2E-10945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.9051045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.9E-151043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.11878122IPR014977WRC domain
PfamPF088791.2E-2079121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVVGGGSRYP FTASQWQELE LQALIFKYMV SGIPVPPDLI LCIRRSLFVE PQTLPFLPHR  60
PTVGWEAYQV GDGRKAVDPE PGRCRRTDGK KWRCSKEAFP DSKYCERHMH RGKSRSRKPV  120
ELSLATTPIS SHFPPPTAPP PPPPPLSLST PHHTHHFLFP CSSSSSSSSS SSSSSSSRPP  180
PMMAHSQQDD SSGYRYAILG FRQDVNEHPF FSEACRGGRE MPFRLGPVEV SSPEQTKQRH  240
VHMQSSRSHI GVCLWVVQEE EKHYFVLGAD FKTQRKGEAE REEPAQNLRP FHCFLDEKPS  300
TVVDSWLGMA VDQSKQAPDL KTRLSITIPV ANHDMPVTAP PCYSGATLAA CSTLLLRFSS  360
SYTFFSSFTS LPFLMQMVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408738.20.0PREDICTED: growth-regulating factor 6-like
TrEMBLM0S2020.0M0S202_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-47growth-regulating factor 5