PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P20530_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 277aa    MW: 31361.4 Da    PI: 4.7106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P20530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.4e-50101381129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF P+deelv++yL kkv+++++    ++ evd+++ ePw+Lp+ +k +++ewyfFs rd+kyatg r nratksgyWkatgk
  GSMUA_Achr1P20530_001  10 LPPGFRFCPSDEELVCYYLYKKVANERVLG-GTLVEVDLHTREPWELPEVAKLSTNEWYFFSFRDRKYATGLRMNRATKSGYWKATGK 96 
                            79*************************777.78***************88888999******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d++v++  + ++vg++ktLvfy+grap+g+k++Wvmhe+rle
  GSMUA_Achr1P20530_001  97 DRTVCEPtTLAVVGMRKTLVFYSGRAPNGVKSNWVMHEFRLE 138
                            *****9866678***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-597156IPR003441NAC domain
PROSITE profilePS5100557.13610156IPR003441NAC domain
PfamPF023659.5E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGLRDIQATL PPGFRFCPSD EELVCYYLYK KVANERVLGG TLVEVDLHTR EPWELPEVAK  60
LSTNEWYFFS FRDRKYATGL RMNRATKSGY WKATGKDRTV CEPTTLAVVG MRKTLVFYSG  120
RAPNGVKSNW VMHEFRLEAP YSPPKEDWVL CRVFQKNKGK PMGDSLENEH GCLGSSPPPV  180
LDHTMGDECY ETMITSFNIV TQESREEDDL NFAAPRGNYV DFPGALDSSM MMGVGSGSRS  240
DEEDDCELLL DMSCLQDHDP VGGCFRFQAT STDQLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4711574166NO APICAL MERISTEM PROTEIN
1ut4_B4e-4711574166NO APICAL MERISTEM PROTEIN
1ut7_A4e-4711574166NO APICAL MERISTEM PROTEIN
1ut7_B4e-4711574166NO APICAL MERISTEM PROTEIN
4dul_A4e-4711574166NAC domain-containing protein 19
4dul_B4e-4711574166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414009.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ24e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0S1L10.0M0S1L1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P20530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]