PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P20530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 277aa MW: 31361.4 Da PI: 4.7106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.4e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL kkv+++++ ++ evd+++ ePw+Lp+ +k +++ewyfFs rd+kyatg r nratksgyWkatgk GSMUA_Achr1P20530_001 10 LPPGFRFCPSDEELVCYYLYKKVANERVLG-GTLVEVDLHTREPWELPEVAKLSTNEWYFFSFRDRKYATGLRMNRATKSGYWKATGK 96 79*************************777.78***************88888999******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v++ + ++vg++ktLvfy+grap+g+k++Wvmhe+rle GSMUA_Achr1P20530_001 97 DRTVCEPtTLAVVGMRKTLVFYSGRAPNGVKSNWVMHEFRLE 138 *****9866678***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-59 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGLRDIQATL PPGFRFCPSD EELVCYYLYK KVANERVLGG TLVEVDLHTR EPWELPEVAK 60 LSTNEWYFFS FRDRKYATGL RMNRATKSGY WKATGKDRTV CEPTTLAVVG MRKTLVFYSG 120 RAPNGVKSNW VMHEFRLEAP YSPPKEDWVL CRVFQKNKGK PMGDSLENEH GCLGSSPPPV 180 LDHTMGDECY ETMITSFNIV TQESREEDDL NFAAPRGNYV DFPGALDSSM MMGVGSGSRS 240 DEEDDCELLL DMSCLQDHDP VGGCFRFQAT STDQLFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 1 | 157 | 4 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 1 | 157 | 4 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414009.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 4e-60 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M0S1L1 | 0.0 | M0S1L1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P20530_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-78 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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