PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P20010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 1050aa MW: 117986 Da PI: 6.6592 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 1e-22 | 269 | 372 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+l+ sd++++g +++p++ ae+ + +++ +l+++d++ + W++++iyr++++r++lt+GW+ Fv+a++Lk+gD+ GSMUA_Achr1P20010_001 269 FCKILIVSDTSTHGGFSVPRRAAEKLfpqlvrrlfN--ATSKSELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSAKRLKAGDS 354 89*********************999**99998642..335559******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++v+r+ GSMUA_Achr1P20010_001 355 VLFI--RDEKSQLLLGVRRA 372 ****..45677789999997 PP | |||||||
2 | Auxin_resp | 103.7 | 2.3e-34 | 397 | 479 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+v+Yn ra++seF++++ k++ka ++++s+GmRf m+fete s+ r ++Gt+vg+sd+dpvrWpnS+W++L+ GSMUA_Achr1P20010_001 397 AAHAVASRSPFTVYYNRRACSSEFIIPLTKYHKAAYTQLSIGMRFGMMFETESSKSRLYMGTIVGISDYDPVRWPNSRWQNLQ 479 79******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-36 | 257 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-33 | 264 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.80E-19 | 268 | 371 | No hit | No description |
PROSITE profile | PS50863 | 12.774 | 269 | 373 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-20 | 269 | 372 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 269 | 373 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-30 | 397 | 479 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.945 | 950 | 1034 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.5E-7 | 961 | 1036 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1050 aa Download sequence Send to blast |
MTLIIFCYMF CMDNYRSSSF SAPTSVKICS VLEDVQWMML KWCPPNANAV KICSLDCCFW 60 CLEGDTTYFV VGCLREVFGS RDDGCSMEVP LLLRGEAVVH HSVFSFVSIQ VNLLRLLVED 120 VFHSNKCRVS GLKNAAALLD EMKLLGDVPS KPSARKVLNS EFWHACAGPL VSLPQPGSLL 180 NYFPQGYSEQ VLFFLIISFC FKPSFLSQKK ILIKLLLQII KSIHSLADKE TDKIYAQMTL 240 QPVSSVRFSS CFVELHILIL ICKHPTEIFC KILIVSDTST HGGFSVPRRA AEKLFPQLVR 300 RLFNATSKSE LIVRDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVSAKRLK AGDSVLFIRD 360 EKSQLLLGVR RANRKQTALT SSVLSTDSMH IGVLAVAAHA VASRSPFTVY YNRRACSSEF 420 IIPLTKYHKA AYTQLSIGMR FGMMFETESS KSRLYMGTIV GISDYDPVRW PNSRWQNLQV 480 EWYEHGYGER PDTVSLWEIE TPESLFAFPN ATSSLKRQCL RGYVGSPYHT HRWEPKIDVE 540 LVCEILFSLQ TPFRPEIYNV IYPAHILVPR NFILFNNALK FFLMCAVEMF PISYVPNFPT 600 FAIIPFQQSL HHEPKLILGL QQSVDYDLKG TAASKYCPAI NNQFVNLKPF TNPTEDGNVD 660 TQHFFACFGS ENFSRLLNKP CNLNCDGLLG HHQSIYAGIL QNVRSRELSR SFSVIMLALH 720 TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSLMAN PNNFEPTETF QLSCISDSGT 780 PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG DCTVLQGVSI SYGIMDLFEE 840 SNNQGETIGN LHLDPINESM DMGHVPGAAM DGLSPIGSSW FQIPSVMPVC NFTSNQESLS 900 HITSTRMTDS VFSLQDVPDS SAGTSSASIA TNDCSLYRGS RKQACRQPLR TCTKVQKVGS 960 VGRSIDVTRF SNYYELRSAV ACMFGLEGQL DDPHGSEWKL VYIYYENDVL LVGDDPWEEF 1020 INCVKCIRIL SPSEVQQMSW EGMQLMDGFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-144 | 136 | 504 | 31 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681292.1 | 0.0 | PREDICTED: auxin response factor 11 | ||||
Swissprot | Q01K26 | 1e-161 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 1e-161 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | M0S1F9 | 0.0 | M0S1F9_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr1P20010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 1e-147 | ARF family protein |
Publications ? help Back to Top | |||
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