PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P20010_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 1050aa    MW: 117986 Da    PI: 6.6592
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P20010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22269372199
                            EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                            f+k+l+ sd++++g +++p++ ae+          +   +++ +l+++d++ + W++++iyr++++r++lt+GW+ Fv+a++Lk+gD+
  GSMUA_Achr1P20010_001 269 FCKILIVSDTSTHGGFSVPRRAAEKLfpqlvrrlfN--ATSKSELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSAKRLKAGDS 354
                            89*********************999**99998642..335559******************************************** PP

                            EEEEE-SSSEE..EEEEE-S CS
                     B3  80 vvFkldgrsefelvvkvfrk 99 
                            v+F   ++++ +l+++v+r+
  GSMUA_Achr1P20010_001 355 VLFI--RDEKSQLLLGVRRA 372
                            ****..45677789999997 PP

2Auxin_resp103.72.3e-34397479183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha++++s+F+v+Yn ra++seF++++ k++ka ++++s+GmRf m+fete s+ r ++Gt+vg+sd+dpvrWpnS+W++L+
  GSMUA_Achr1P20010_001 397 AAHAVASRSPFTVYYNRRACSSEFIIPLTKYHKAAYTQLSIGMRFGMMFETESSKSRLYMGTIVGISDYDPVRWPNSRWQNLQ 479
                            79******************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-36257400IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-33264385IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-19268371No hitNo description
PROSITE profilePS5086312.774269373IPR003340B3 DNA binding domain
PfamPF023622.6E-20269372IPR003340B3 DNA binding domain
SMARTSM010191.1E-22269373IPR003340B3 DNA binding domain
PfamPF065071.2E-30397479IPR010525Auxin response factor
PROSITE profilePS5174522.9459501034IPR000270PB1 domain
PfamPF023091.5E-79611036IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MTLIIFCYMF CMDNYRSSSF SAPTSVKICS VLEDVQWMML KWCPPNANAV KICSLDCCFW  60
CLEGDTTYFV VGCLREVFGS RDDGCSMEVP LLLRGEAVVH HSVFSFVSIQ VNLLRLLVED  120
VFHSNKCRVS GLKNAAALLD EMKLLGDVPS KPSARKVLNS EFWHACAGPL VSLPQPGSLL  180
NYFPQGYSEQ VLFFLIISFC FKPSFLSQKK ILIKLLLQII KSIHSLADKE TDKIYAQMTL  240
QPVSSVRFSS CFVELHILIL ICKHPTEIFC KILIVSDTST HGGFSVPRRA AEKLFPQLVR  300
RLFNATSKSE LIVRDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVSAKRLK AGDSVLFIRD  360
EKSQLLLGVR RANRKQTALT SSVLSTDSMH IGVLAVAAHA VASRSPFTVY YNRRACSSEF  420
IIPLTKYHKA AYTQLSIGMR FGMMFETESS KSRLYMGTIV GISDYDPVRW PNSRWQNLQV  480
EWYEHGYGER PDTVSLWEIE TPESLFAFPN ATSSLKRQCL RGYVGSPYHT HRWEPKIDVE  540
LVCEILFSLQ TPFRPEIYNV IYPAHILVPR NFILFNNALK FFLMCAVEMF PISYVPNFPT  600
FAIIPFQQSL HHEPKLILGL QQSVDYDLKG TAASKYCPAI NNQFVNLKPF TNPTEDGNVD  660
TQHFFACFGS ENFSRLLNKP CNLNCDGLLG HHQSIYAGIL QNVRSRELSR SFSVIMLALH  720
TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSLMAN PNNFEPTETF QLSCISDSGT  780
PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG DCTVLQGVSI SYGIMDLFEE  840
SNNQGETIGN LHLDPINESM DMGHVPGAAM DGLSPIGSSW FQIPSVMPVC NFTSNQESLS  900
HITSTRMTDS VFSLQDVPDS SAGTSSASIA TNDCSLYRGS RKQACRQPLR TCTKVQKVGS  960
VGRSIDVTRF SNYYELRSAV ACMFGLEGQL DDPHGSEWKL VYIYYENDVL LVGDDPWEEF  1020
INCVKCIRIL SPSEVQQMSW EGMQLMDGFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-14413650431392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681292.10.0PREDICTED: auxin response factor 11
SwissprotQ01K261e-161ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9831e-161ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0S1F90.0M0S1F9_MUSAM; Auxin response factor
STRINGGSMUA_Achr1P20010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-147ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]