PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P20000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 971aa    MW: 107783 Da    PI: 6.3777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P20000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-18204288180
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+k+lt sd++k+g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+ D++
  GSMUA_Achr1P20000_001 204 FCKILTVSDTSKHGGFSVPRRAAEKLcpqldySMQPPN-QELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKKLKAVDSI 288
                            99*********************999*****9555555.49*****************************************9986 PP

2Auxin_resp112.83.2e-37370453183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete ss+rrl +Gt+vg+sd+dpvrWpnS+Wr+L+
  GSMUA_Achr1P20000_001 370 AAHAAASRSPFTVLYNPRACPSEFIIPMTKYHKAAYTQVSIGMRFGMMFETEVSSKRRLyMGTIVGISDYDPVRWPNSRWRNLQ 453
                            79*******************************************************999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-31195284IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-28198288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-15203288No hitNo description
SMARTSM010192.0E-11204305IPR003340B3 DNA binding domain
PROSITE profilePS508638.938204308IPR003340B3 DNA binding domain
PfamPF023624.9E-16204288IPR003340B3 DNA binding domain
PfamPF065074.6E-33370453IPR010525Auxin response factor
PfamPF023093.0E-7863948IPR033389AUX/IAA domain
PROSITE profilePS5174522.4864948IPR000270PB1 domain
SuperFamilySSF542771.47E-5883943No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MSATGADTKP EEGETAAVAP AAGEVLYCGG TNWDMLGRMG APNAANLVSP TRLRPLVGVD  60
IRFVASGCIC GLKNAAALLD EMKLLGEVPS KPSARKVLNS ELWHACAGPL VSLPQPGSLV  120
YYFPQGHIEQ VTSSTRKMAN SRIPSYTDLP SQFMCQVRNV TLHADKETDE IYAQMTLQPV  180
TSENDVFPIP DLGHTRCKHP TEFFCKILTV SDTSKHGGFS VPRRAAEKLC PQLDYSMQPP  240
NQELIVRDLH DNLWTFRHIY RGQPKRHLLT TGWSLFVGAK KLKAVDSIKQ CRSLSPNDLR  300
HFSRISLAGL SIHSVAKPSL KSETNEMCSA CRDENSQLLL GVRCANRKLT ALTSSVLSTD  360
SMHIGVLAAA AHAAASRSPF TVLYNPRACP SEFIIPMTKY HKAAYTQVSI GMRFGMMFET  420
EVSSKRRLYM GTIVGISDYD PVRWPNSRWR NLQVEWYEHG YGERPDRVSL WEIETPESIF  480
AFPNVTSSLK RQCLPGYVAH ILVPRNFILF NNALKFLSNI LFQNTAQYNF SFFCGHLARK  540
GQEALALRFT GIEDTRLMCA VEIFPISYVP NFPTFAIVPF QQSLHHEVLF ICTSDISGPA  600
INNQFVNLNP FTNPTEDGNV DTQHFFAGFG SENFSRLLNK PCNPNCDGLL GHHQSIYAGI  660
LQNVRSCELS RSFSVMPALH TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSSMAN  720
PNNFEPTETF QLSCISESGT PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG  780
DCTVLQGVSN SYGIMDLLEE CNNQVMDGLS PIVSHITSTR MTDSVFSLQD VPDSSAGTSS  840
AIIAMNDCSL YQGSRKQACQ QPLRTYTKVQ KVGSVGRSID VTRFSNYYEL RSAVACMFGL  900
EGQLDDPRGS EWKLVYIDYE NDVLQVGDDP WEEFINCVKC IRILSPYEVQ KMSQEGMQLM  960
DGFAWFNWCG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1727647831392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681292.10.0PREDICTED: auxin response factor 11
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0S1F80.0M0S1F8_MUSAM; Auxin response factor
STRINGGSMUA_Achr1P20000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-180ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]