PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P20000_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 971aa MW: 107783 Da PI: 6.3777 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.3 | 5.8e-18 | 204 | 288 | 1 | 80 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++k+g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+ D++ GSMUA_Achr1P20000_001 204 FCKILTVSDTSKHGGFSVPRRAAEKLcpqldySMQPPN-QELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKKLKAVDSI 288 99*********************999*****9555555.49*****************************************9986 PP | |||||||
2 | Auxin_resp | 112.8 | 3.2e-37 | 370 | 453 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete ss+rrl +Gt+vg+sd+dpvrWpnS+Wr+L+ GSMUA_Achr1P20000_001 370 AAHAAASRSPFTVLYNPRACPSEFIIPMTKYHKAAYTQVSIGMRFGMMFETEVSSKRRLyMGTIVGISDYDPVRWPNSRWRNLQ 453 79*******************************************************999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-31 | 195 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-28 | 198 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-15 | 203 | 288 | No hit | No description |
SMART | SM01019 | 2.0E-11 | 204 | 305 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.938 | 204 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-16 | 204 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-33 | 370 | 453 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-7 | 863 | 948 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.4 | 864 | 948 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.47E-5 | 883 | 943 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 971 aa Download sequence Send to blast |
MSATGADTKP EEGETAAVAP AAGEVLYCGG TNWDMLGRMG APNAANLVSP TRLRPLVGVD 60 IRFVASGCIC GLKNAAALLD EMKLLGEVPS KPSARKVLNS ELWHACAGPL VSLPQPGSLV 120 YYFPQGHIEQ VTSSTRKMAN SRIPSYTDLP SQFMCQVRNV TLHADKETDE IYAQMTLQPV 180 TSENDVFPIP DLGHTRCKHP TEFFCKILTV SDTSKHGGFS VPRRAAEKLC PQLDYSMQPP 240 NQELIVRDLH DNLWTFRHIY RGQPKRHLLT TGWSLFVGAK KLKAVDSIKQ CRSLSPNDLR 300 HFSRISLAGL SIHSVAKPSL KSETNEMCSA CRDENSQLLL GVRCANRKLT ALTSSVLSTD 360 SMHIGVLAAA AHAAASRSPF TVLYNPRACP SEFIIPMTKY HKAAYTQVSI GMRFGMMFET 420 EVSSKRRLYM GTIVGISDYD PVRWPNSRWR NLQVEWYEHG YGERPDRVSL WEIETPESIF 480 AFPNVTSSLK RQCLPGYVAH ILVPRNFILF NNALKFLSNI LFQNTAQYNF SFFCGHLARK 540 GQEALALRFT GIEDTRLMCA VEIFPISYVP NFPTFAIVPF QQSLHHEVLF ICTSDISGPA 600 INNQFVNLNP FTNPTEDGNV DTQHFFAGFG SENFSRLLNK PCNPNCDGLL GHHQSIYAGI 660 LQNVRSCELS RSFSVMPALH TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSSMAN 720 PNNFEPTETF QLSCISESGT PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG 780 DCTVLQGVSN SYGIMDLLEE CNNQVMDGLS PIVSHITSTR MTDSVFSLQD VPDSSAGTSS 840 AIIAMNDCSL YQGSRKQACQ QPLRTYTKVQ KVGSVGRSID VTRFSNYYEL RSAVACMFGL 900 EGQLDDPRGS EWKLVYIDYE NDVLQVGDDP WEEFINCVKC IRILSPYEVQ KMSQEGMQLM 960 DGFAWFNWCG F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-172 | 76 | 478 | 31 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681292.1 | 0.0 | PREDICTED: auxin response factor 11 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | M0S1F8 | 0.0 | M0S1F8_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr1P20000_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 1e-180 | ARF family protein |
Publications ? help Back to Top | |||
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