PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P18760_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 756aa MW: 82513.1 Da PI: 6.101

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P18760_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.8e-21	109	164	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k GSMUA_Achr1P18760_001 109 KKRYHRHTPLQIQELEALFKECPHPDEKQRLELSKRLNLETRQVKFWFQNRRTQMK 164 688999***********************************************999 PP
2	START	191.4	4.3e-60	278	499	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla. 77 la+ a++elv +a+ eep+Wv ss e +n + +l++f + + + +ea+r +gvv+ ++ lve+l+d + +W +++ GSMUA_Achr1P18760_001 278 LALVAMEELVNMAQMEEPLWVPSSdggtETLNHEQYLRTFRRISGtgmppvgYASEASRQKGVVIINSLALVETLMDAR-RWADMFPc 364 67889*********************************775559*****************************.**** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155 ka+t+evis g galqlm aelq+lsplv+ R+++f+R+++q+ +g+w++vdvSvds + s++ +++lpSg++++ GSMUA_Achr1P18760_001 365 iiaKATTMEVISGGvggtrdGALQLMHAELQVLSPLVAvREVYFLRFCKQHAEGVWAVVDVSVDSIRASF---SSASCRRLPSGCVVQ 449 ****************************************************************65...5677778**** PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++ g+skvtwveh+++++ ++h+l+r+l++sgla+ga +wvatlqrqce GSMUA_Achr1P18760_001 450 DMPSGYSKVTWVEHAEYEEGQVHQLYRPLLRSGLAFGAGRWVATLQRQCE 499 ***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-21	97	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.61E-21	98	166	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.75	106	166	IPR001356	Homeobox domain
SMART	SM00389	1.9E-19	107	170	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-18	109	164	IPR001356	Homeobox domain
CDD	cd00086	1.27E-19	109	166	No hit	No description
PROSITE pattern	PS00027	0	141	164	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	42.172	268	503	IPR002913	START domain
SuperFamily	SSF55961	8.79E-31	272	500	No hit	No description
CDD	cd08875	1.30E-113	272	499	No hit	No description
SMART	SM00234	5.6E-44	277	500	IPR002913	START domain
Pfam	PF01852	2.5E-51	278	499	IPR002913	START domain
SuperFamily	SSF55961	2.42E-17	522	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MSFGGLSDGR SGALPYGKAA MTTGELSPPE FISQRLPKPS FVSPGLSLGL VKKTDPCIID 60 TSRMAAVGGG SDVDSAKRNK EDENDSRSES DNLEAISGDD TDQVNPRKKK RYHRHTPLQI 120 QELEALFKEC PHPDEKQRLE LSKRLNLETR QVKFWFQNRR TQMKTQIERH ENSILRQEND 180 KLRAENMAIR EAARNPVCNS CGGPAMLADI SMEEQQLRIE NARLKEELDR VCALAGKFLG 240 KSISSLSEPI SPSMRSSVLE LGVGNNGFLG ERSMHLELAL VAMEELVNMA QMEEPLWVPS 300 SDGGTETLNH EQYLRTFRRI SGTGMPPVGY ASEASRQKGV VIINSLALVE TLMDARRWAD 360 MFPCIIAKAT TMEVISGGVG GTRDGALQLM HAELQVLSPL VAVREVYFLR FCKQHAEGVW 420 AVVDVSVDSI RASFSSASCR RLPSGCVVQD MPSGYSKVTW VEHAEYEEGQ VHQLYRPLLR 480 SGLAFGAGRW VATLQRQCEG LAILMSSAIT ARDETETITA SGRRSMLKLA QRMTNAFCAG 540 VCTSSAQEWS KLATENVGDE VRVMTRMSVN EPGEPAGVVL SAATSVWIPE SPKRLFDFLR 600 EASFRSKWDI LSNGAPMYEM AHIAKGQDAG NAVSLLRASA ASSNQTSMLI LQETCTDASG 660 AMVVYAPVDI PAMHLVMSGG DSAYVALLPS GFAILPDRSV EPHQTSGSLG SLLTVGFQIL 720 VNSQPTAKLT MESVETVNGL ISCTVQKIKA ALQCDD

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MSFGGLSDGR SGALPYGKAA MTTGELSPPE FISQRLPKPS FVSPGLSLGL VKKTDPCIID  60
TSRMAAVGGG SDVDSAKRNK EDENDSRSES DNLEAISGDD TDQVNPRKKK RYHRHTPLQI  120
QELEALFKEC PHPDEKQRLE LSKRLNLETR QVKFWFQNRR TQMKTQIERH ENSILRQEND  180
KLRAENMAIR EAARNPVCNS CGGPAMLADI SMEEQQLRIE NARLKEELDR VCALAGKFLG  240
KSISSLSEPI SPSMRSSVLE LGVGNNGFLG ERSMHLELAL VAMEELVNMA QMEEPLWVPS  300
SDGGTETLNH EQYLRTFRRI SGTGMPPVGY ASEASRQKGV VIINSLALVE TLMDARRWAD  360
MFPCIIAKAT TMEVISGGVG GTRDGALQLM HAELQVLSPL VAVREVYFLR FCKQHAEGVW  420
AVVDVSVDSI RASFSSASCR RLPSGCVVQD MPSGYSKVTW VEHAEYEEGQ VHQLYRPLLR  480
SGLAFGAGRW VATLQRQCEG LAILMSSAIT ARDETETITA SGRRSMLKLA QRMTNAFCAG  540
VCTSSAQEWS KLATENVGDE VRVMTRMSVN EPGEPAGVVL SAATSVWIPE SPKRLFDFLR  600
EASFRSKWDI LSNGAPMYEM AHIAKGQDAG NAVSLLRASA ASSNQTSMLI LQETCTDASG  660
AMVVYAPVDI PAMHLVMSGG DSAYVALLPS GFAILPDRSV EPHQTSGSLG SLLTVGFQIL  720
VNSQPTAKLT MESVETVNGL ISCTVQKIKA ALQCDD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412599.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC5-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	M0S134	0.0	M0S134_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P18760_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]