PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P18670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 33818.5 Da PI: 4.5441

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P18670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.6e-20	89	144	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rr+R++f++eq++ +e++Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k GSMUA_Achr1P18670_001 89 RRTRRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 144 89*****************************************************9 PP
2	HD-ZIP_I/II	117.9	5.7e-38	91	182	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +rr+s+eq+k++E++Fe+++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ Lk+ ydal ++ ++L+ke++ L + GSMUA_Achr1P18670_001 91 TRRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYRGLKADYDALLSSFDSLKKEKQLLLQ 178 589************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l++ GSMUA_Achr1P18670_001 179 QLQD 182 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-19	65	147	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-20	74	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.998	86	146	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	88	150	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-17	89	144	IPR001356	Homeobox domain
CDD	cd00086	2.14E-14	95	147	No hit	No description
PRINTS	PR00031	1.1E-5	117	126	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	126	142	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.0E-14	146	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MNLETRVWER NSSSPSFLQE HLSAADIEQH IHPPTSSPCC CCWWWWWLTE GSACEMMESE 60 EEQSAAEEGD CCSWMNPTAE SSKGKGDRRR TRRRFSEEQI KSMESMFETQ TKLEPRQKLQ 120 LARELGLQPR QVAIWFQNKR ARWKSKQLER EYRGLKADYD ALLSSFDSLK KEKQLLLQQL 180 QDLAELIDKA EERSNRDDEG SNDRDSEIKK DQSSRLSLKE EADLEFAVCA AEEDKKPRYF 240 SEDELNLCAG QPAISSLTSS AEQQFCLTTS WPSDQSCNNS QWWEFWPLSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036173	8e-56	BT036173.1 Zea mays full-length cDNA clone ZM_BFb0099K03 mRNA, complete cds.
GenBank	BT041114	8e-56	BT041114.1 Zea mays full-length cDNA clone ZM_BFc0176L16 mRNA, complete cds.
GenBank	EU963550	8e-56	EU963550.1 Zea mays clone 263983 homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds.
GenBank	KJ727608	8e-56	KJ727608.1 Zea mays clone pUT5468 HB transcription factor (HB126) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412772.1	1e-166	PREDICTED: homeobox-leucine zipper protein HOX6-like
Swissprot	Q651Z5	4e-52	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	4e-52	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	M0S125	0.0	M0S125_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P18670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-35	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]