PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P18650_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SRS | ||||||||
Protein Properties | Length: 308aa MW: 32558.2 Da PI: 7.5219 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211.6 | 1.9e-65 | 89 | 230 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 sg +sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpaakrrerqq+l+a+ a+a skr+re ++ + l ++ GSMUA_Achr1P18650_001 89 SGVMSCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQELTAS--------AAAPSKRPREI--TACTRLPAAM 166 7889**********************************************9999886........56788999987..5555666666 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+++ +l+ +s+P+evs++avfrcvr+s vd++++ +aYq+avsigGhvfkG+Lyd+G+e+ GSMUA_Achr1P18650_001 167 ASTTTYGGSLDPESFPPEVSAQAVFRCVRLSHVDEADDIYAYQAAVSIGGHVFKGLLYDHGPEA 230 666677778999**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.9E-62 | 91 | 229 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.5E-27 | 93 | 135 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.7E-23 | 181 | 228 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAGFFLGGGG GSQQQRGEQQ GGGIPPSESF FLYGVRGGRG EDVAYTRGFE LWQHHQIQRE 60 QQLYSTAGFP DELPSVAPRP ARGSLGGGSG VMSCQDCGNQ AKKDCAHMRC RTCCKSRGFQ 120 CPTHVKSTWV PAAKRRERQQ ELTASAAAPS KRPREITACT RLPAAMASTT TYGGSLDPES 180 FPPEVSAQAV FRCVRLSHVD EADDIYAYQA AVSIGGHVFK GLLYDHGPEA EYPSSSSSRY 240 QLHHGEGSSS PAAAAATAIV SASASASAGD AAIATTATAA ATELLEPYPT PLSAFMAGTQ 300 FFPHQHRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241285 | 3e-43 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. | |||
GenBank | AP005314 | 3e-43 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. | |||
GenBank | AP005567 | 3e-43 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. | |||
GenBank | AP014965 | 3e-43 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-43 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412816.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | M0S123 | 0.0 | M0S123_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P18650_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-57 | Lateral root primordium (LRP) protein-related |