PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P18610_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 234aa    MW: 26095.4 Da    PI: 6.8833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P18610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+teEd++l+  +   G  +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr1P18610_001 14 KGPWSTEEDKKLISFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP

2Myb_DNA-binding44.24.4e-1470111447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++ E++l +d +++lG++ W++Ia++++ gRt++++k+ w+++
  GSMUA_Achr1P18610_001  70 LSPAEEQLVIDFHARLGNR-WSKIAAMLP-GRTDNEIKNLWNTH 111
                            5899***************.*********.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129411.756961IPR017930Myb domain
SuperFamilySSF466891.17E-2511108IPR009057Homeodomain-like
SMARTSM007172.0E-111363IPR001005SANT/Myb domain
PfamPF002493.3E-141461IPR001005SANT/Myb domain
CDDcd001672.01E-81661No hitNo description
PROSITE profilePS5129423.71262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2363117IPR009057Homeodomain-like
SMARTSM007171.5E-1166114IPR001005SANT/Myb domain
PfamPF002499.3E-1370111IPR001005SANT/Myb domain
CDDcd001672.91E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRRPCCDKL GVKKGPWSTE EDKKLISFIL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SPAEEQLVID FHARLGNRWS KIAAMLPGRT DNEIKNLWNT HIKKKLVKMG  120
VDPVTHKPLD RKANSVSSQS TATTESKSDQ QLQSRGTDGQ IQSSENTSSP TEASSNADGA  180
DPLLSCLWED NTSLLDELWQ FPSNEDVDYG SVAGPVWPWD EGSCEWLLDD QALG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837352e-55BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855212e-55BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856252e-55BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412832.11e-172PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-92ODO1_PETHY; Protein ODORANT1
TrEMBLM0S1191e-171M0S119_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P18610_0011e-171(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.16e-85myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]