PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P18110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24632.5 Da PI: 8.8827 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.7 | 1.3e-24 | 4 | 114 | 25 | 128 |
NAM 25 gkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglk 103 g+kl++ ++i+++++y+++Pw++ + ++ +e+ew+f+++rd+k+ g r++r+t++g Wk tg d++v s+ ++l+glk GSMUA_Achr1P18110_001 4 GTKLQF-QIITTIHLYRHDPWEIITtfhltaiTACMGEREWHFYVPRDRKQG-GGRPSRTTERGLWKVTGCDRPVRSAtdPKRLIGLK 89 555666.78**************7446676553334899**********975.89*********************98766778**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 ktLv+ +grap+g+ +d vm+eyrl GSMUA_Achr1P18110_001 90 KTLVYCQGRAPRGTMADRVMNEYRL 114 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.425 | 1 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-28 | 2 | 133 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-7 | 29 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MIHGTKLQFQ IITTIHLYRH DPWEIITTFH LTAITACMGE REWHFYVPRD RKQGGGRPSR 60 TTERGLWKVT GCDRPVRSAT DPKRLIGLKK TLVYCQGRAP RGTMADRVMN EYRLARELIP 120 TEGVIVLCKI CRKATSMKEL EQRAAAMEEK TSASQVSGSV AVSSPGWSDQ ESFQMTCTYV 180 MDVLCDHTQE EEEVGVPAAD KRRNAIMHQL LILRLGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-24 | 4 | 114 | 39 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414556.1 | 1e-135 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 9e-57 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | M0S0W9 | 1e-161 | M0S0W9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P18110_001 | 1e-162 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-48 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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