PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 282aa    MW: 30180.5 Da    PI: 7.1597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-101155345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +WT e d+ +  a + +  +   +W++Ia  ++ g+t +++k+++ 
  GSMUA_Achr1P17730_001 11 SWTREQDKAFEYALATHHEDcdnRWEKIAVDVP-GKTIEDIKHHYE 55
                           7*****************99*************.**********96 PP
2Myb_DNA-binding39.99.6e-13118162347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  GSMUA_Achr1P17730_001 118 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 162
                            6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-7860IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-101065IPR009057Homeodomain-like
PROSITE profilePS500906.7711158IPR017877Myb-like domain
PfamPF002491.8E-71155IPR001005SANT/Myb domain
CDDcd001673.91E-81158No hitNo description
Gene3DG3DSA:1.10.10.605.1E-51254IPR009057Homeodomain-like
PROSITE profilePS5129417.014110167IPR017930Myb domain
SuperFamilySSF466891.87E-16113168IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17115165IPR006447Myb domain, plants
SMARTSM007179.3E-11115165IPR001005SANT/Myb domain
PfamPF002493.1E-11118162IPR001005SANT/Myb domain
CDDcd001672.63E-10118163No hitNo description
Gene3DG3DSA:1.10.10.608.9E-11118161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVMEEASCSP SWTREQDKAF EYALATHHED CDNRWEKIAV DVPGKTIEDI KHHYELLVED  60
VNGIESGRVP LPCYPSSSEG GDLANEGGGS KKGGHSHGDS AHGGKASRSD QERRKGIAWT  120
EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN KDRRRTSIHD  180
ITTVTNGDTP TPQGPITGQI NASVATAGKS AKHSLQSAAD PAGVGIFGTT IGQPVVGGPL  240
MPAVGTPVNL PVPAGSHIGY PVRTPASISS TTYQMPPTSS GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1512861183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398308.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_009398316.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_009398324.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-104SRM1_ARATH; Transcription factor SRM1
TrEMBLM0S0T10.0M0S0T1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-99MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]