PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P17670_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 217aa MW: 24118.8 Da PI: 7.2496 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 108.4 | 3.5e-34 | 33 | 87 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 al+cprC+stntkfCyynnys qPr++C+aCrr+Wt+GGalrnvPvGg+r++++ GSMUA_Achr1P17670_001 33 ALRCPRCESTNTKFCYYNNYSKLQPRHYCRACRRHWTEGGALRNVPVGGSRKNKR 87 689********************************************98765554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-21 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-30 | 33 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.543 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MILLFGFVLK DADLVGGRAQ QRERQTRNAA VAALRCPRCE STNTKFCYYN NYSKLQPRHY 60 CRACRRHWTE GGALRNVPVG GSRKNKRPRG AQTTPADASD GHGNGRSIDD GSSSVFSDAS 120 NLPIIRQPTP PEHFGAGSEE PLVSSSYHES PHPFSSLPFY DCTGQDSFTV DDRLFAMETS 180 MLHLPASNLS HWDDIIDLVN LELKPPAPDR VDHTLTY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398382.1 | 1e-163 | PREDICTED: dof zinc finger protein DOF1.4-like isoform X1 | ||||
Refseq | XP_018682867.1 | 1e-163 | PREDICTED: dof zinc finger protein DOF1.4-like isoform X1 | ||||
TrEMBL | M0S0S5 | 1e-161 | M0S0S5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P17670_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 5e-29 | TARGET OF MONOPTEROS 6 |