PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 273aa    MW: 30536.1 Da    PI: 6.7108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-14552148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed +l d++ ++G  +W++++   g+ R +k+c++rw +yl
  GSMUA_Achr1P17480_001  5 KGLWSPDEDRRLRDYILKHGLSCWSAVPGSAGLQRNGKSCRLRWINYL 52
                           678*******************************************97 PP
2Myb_DNA-binding49.69.4e-1658120148
                            TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++++eE+e  +++ ++lG++                 W+ Ia +++ gRt++++k++w++yl
  GSMUA_Achr1P17480_001  58 RGNFSPEEEETVINLQAKLGNRkeqyvankeflrpnlmMWSQIAMHLP-GRTDNEVKNYWNSYL 120
                            89**********************************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.6E-221116IPR009057Homeodomain-like
PROSITE profilePS5129421.938156IPR017930Myb domain
SMARTSM007172.3E-9454IPR001005SANT/Myb domain
PfamPF002496.2E-12552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-21659IPR009057Homeodomain-like
CDDcd001671.52E-8852No hitNo description
PROSITE profilePS5129414.13857124IPR017930Myb domain
SMARTSM007171.8E-1157122IPR001005SANT/Myb domain
PfamPF002492.3E-1358120IPR001005SANT/Myb domain
CDDcd001671.07E-1060120No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2260124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNYKKGLWSP DEDRRLRDYI LKHGLSCWSA VPGSAGLQRN GKSCRLRWIN YLRPGLKRGN  60
FSPEEEETVI NLQAKLGNRK EQYVANKEFL RPNLMMWSQI AMHLPGRTDN EVKNYWNSYL  120
KKRVTKAQNS DPHASATSSS DCTNQGPVKH EEEPNSQMIS PATHVDIGGF SPKLTALNGL  180
PRVLFGDCLQ ANGGDSLHDR GEVMTNPWHN TNPHGEASGQ ATDGTTNGYA GACMNGEMQA  240
QPEALLQNQE NGFFDILFPG LVYDGMDFCD REF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-19512427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398586.10.0PREDICTED: myb-related protein 340-like
TrEMBLM0S0Q60.0M0S0Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-48myb domain protein 18