PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 411aa    MW: 45046.7 Da    PI: 9.5681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33161217360
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  GSMUA_Achr1P17160_001 161 DGYNWRKYGQKQVKGSEYPRSYYKCTHPTCPVKKKVERSL-DGQIAEIVYKGEHNHPK 217
                            9***************************************.***************85 PP
2WRKY99.12.8e-31331387359
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dgy+WrKYGqK+vkg++fprsYYrCt ++Cpv+k vers+ed   +++tYeg+Hnhe
  GSMUA_Achr1P17160_001 331 DGYHWRKYGQKVVKGNTFPRSYYRCTNPKCPVRKYVERSSEDSAHLVTTYEGRHNHE 387
                            9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29152218IPR003657WRKY domain
PROSITE profilePS5081123.973154218IPR003657WRKY domain
SuperFamilySSF1182908.37E-26157218IPR003657WRKY domain
SMARTSM007747.6E-37159217IPR003657WRKY domain
PfamPF031061.5E-25161216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-31319389IPR003657WRKY domain
PROSITE profilePS5081130.859324389IPR003657WRKY domain
SuperFamilySSF1182901.22E-27326389IPR003657WRKY domain
SMARTSM007741.1E-34329388IPR003657WRKY domain
PfamPF031061.3E-24331387IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MQDAKKIEIA KPVASRPFAS FRPLPELLAR ATSSSPTPSS AERTVAIKPR TMRFKSSSYD  60
SAAEAVPPPD DASEKRSVAT MGSDSVSSFI YKPTAKLVSR TLNLGNFDQV LDQVKTSNSR  120
PQNSASASQS EPNQAYDPSK SVTAGELDTR NQQSADRPSY DGYNWRKYGQ KQVKGSEYPR  180
SYYKCTHPTC PVKKKVERSL DGQIAEIVYK GEHNHPKPQP PKRPSSGSQV ADEHGRETGN  240
PPWSNSLDNH DGLIPTYHFS HDHVLATADD SSTRVVKVGG RAAAVDHDKL DCKRRKNDDR  300
ASGGNSVGEG AAEPHSVMQA SSSVGSDISG DGYHWRKYGQ KVVKGNTFPR SYYRCTNPKC  360
PVRKYVERSS EDSAHLVTTY EGRHNHEMPV RRASRAASDP ETAAAPDGLQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25161389677Probable WRKY transcription factor 4
2ayd_A1e-251613891274WRKY transcription factor 1
2lex_A1e-25161389677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398942.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_018679159.10.0PREDICTED: probable WRKY transcription factor 3
TrEMBLM0S0M40.0M0S0M4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1847669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-73WRKY family protein