PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P16830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 257aa    MW: 28626.8 Da    PI: 8.71
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P16830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-164489555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           hn  ErrRRdriN ++  L+el+P +      K +Ka++L +A+eY+ksLq
  GSMUA_Achr1P16830_001 44 HNLSERRRRDRINAKMKALQELIPRC-----NKSDKASTLDEAIEYMKSLQ 89
                           9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.653988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-204397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-2043115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-144489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.25E-184493No hitNo description
SMARTSM003538.9E-184594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMSKCVSSSQ FTLLLPMTFN WAIELPFICH VILLNERLRA AEIHNLSERR RRDRINAKMK  60
ALQELIPRCN KSDKASTLDE AIEYMKSLQL QVQMMSMGCN PGAVMFPGVQ TYMPPMGMGM  120
HMGLGMGMGM GMGLGMRMGT DMAGGNIPRP ILPFGPIPCP PVTAHPPVQF GPRPTCTTPL  180
MPSFHPSPAM PIADQARFEA INQQNHLSDT LNIRSPNMGQ MPHVADPFHH FLNLQCPLVQ  240
SQVTIFVRLS LYQHPFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406248.11e-120PREDICTED: transcription factor PIF1-like
TrEMBLM0S0J10.0M0S0J1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P16830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2499145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-35phytochrome interacting factor 3-like 5