PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P16280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25338.8 Da PI: 4.6052 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.4e-20 | 27 | 78 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe + ++ a+++++LA++lgL+ rqV +WFqN+Ra++k GSMUA_Achr1P16280_001 27 RRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWK 78 38*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.1 | 7.2e-36 | 25 | 113 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 + rr+s+eq+++LE++Fe+++kLe ++K++lareLglqprqv +WFqn+RAR+k+kql+++y+aL++ ydal ++ ++L+ke++ L + GSMUA_Achr1P16280_001 25 RTRRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWKSKQLDREYRALRADYDALLSRFDSLNKEKQLLLK 112 789********************************************************************************99876 PP HD-ZIP_I/II 90 e 90 + GSMUA_Achr1P16280_001 113 Q 113 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 11 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-18 | 18 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 21 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.05E-14 | 25 | 81 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 27 | 78 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.5E-6 | 51 | 60 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 5.5E-6 | 60 | 76 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-13 | 80 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGESEERCGG EEEEECCSKS SKGDRTRRFS EEQIRSLEST FEAQTKLEAR QKQQLARELG 60 LQPRQVGIWF QNKRARWKSK QLDREYRALR ADYDALLSRF DSLNKEKQLL LKQRQGLTEL 120 LDKTEKNDRD AASKEKEWPR PSLKEEPDLE FAGCTEEEED DDDNTLSYLC EDEPGPRAVQ 180 PATSSVPSSA EKQLHSATGR AAAQTSCSNS PWWEFWPLSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399995.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein HOX6-like | ||||
Swissprot | Q651Z5 | 2e-42 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 2e-42 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | M0S0D6 | 1e-156 | M0S0D6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P16280_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-39 | homeobox 7 |
Publications ? help Back to Top | |||
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