PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P16240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 303aa MW: 33225.9 Da PI: 5.5127

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P16240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.2e-35	34	124	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d+++++++sw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g GSMUA_Achr1P16240_001 34 FLTKTYQLVDDPSVDDVVSWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 112 9***************************************************************99.........******* PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll +i+r+k GSMUA_Achr1P16240_001 113 EKRLLADIHRRK 124 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.0E-58	30	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.39E-35	31	123	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.3E-38	32	123	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-31	34	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-21	34	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-21	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-21	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.20.5.370	1.4E-4	147	175	IPR014751	DNA repair protein XRCC4, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006302	Biological Process	double-strand break repair
GO:0006310	Biological Process	DNA recombination
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGSPPLPPAS EKADETTSAA AGHPEGQRPL PTPFLTKTYQ LVDDPSVDDV VSWNEDGSTF 60 VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDCFR RGEKRLLADI 120 HRRKINPAAA AAAPIATPAT TGSSGPTELR EENERLRKEN ARLLRDLAQI TNVCNQIAVL 180 VSKYAADGGS GGGGGTTEDA DTAAAVEDGV IKVEEWTSEP RTPAGPSPKL FGVSIVGKRV 240 REEETDQDPT PAVKPDPFDP GPDPKEATSP ERHQRSWVVY CPRPIRRSCN VPDNPTDRAR 300 DAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	34	123	29	129	Heat shock factor protein 1
5d5v_B	2e-26	34	123	29	129	Heat shock factor protein 1
5d5v_D	2e-26	34	123	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106525	3e-77	AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
GenBank	FP098629	3e-77	FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400005.1	1e-178	PREDICTED: heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	2e-80	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	M0S0D2	0.0	M0S0D2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P16240_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-53	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]