PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P15600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 299aa MW: 33309.1 Da PI: 4.6319

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P15600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.2	2e-13	50	121	2	73
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt e l+L+ m+e+ ++ + ++W+ +s+++ + + rs++qCk +we+l y++i+e+e ++ + GSMUA_Achr1P15600_001 50 WTTYESLVLVGEIAAMDEDWLKALSSYQKWKMISDNCVALEVVRSSNQCKRRWESLLAGYRRIREWEASHGE 121 99******************************************************************9833 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-8	49	123	No hit	No description
PROSITE profile	PS50090	7.375	50	106	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEHPGTIRAP PATPRKNKED QRAKRSAATS SPPAPASSSR CTRSQAAPDW TTYESLVLVG 60 EIAAMDEDWL KALSSYQKWK MISDNCVALE VVRSSNQCKR RWESLLAGYR RIREWEASHG 120 EGSYWVLDGD RRQQLGLPTW FDREVFSSMG AVLKLQEDWA GRGEADPEYV VDAAGASEDL 180 LLSAEAEMLD VNNAQGSKEN SEDEVQKDRE KTRDMASKLQ ESAQQIHAIL REELEDNLGL 240 DTSPVDLSKP NAAGIEFTRR QADRLIKAFG GLADTLNQFT ELIRSSDCES IKAIDSMAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400641.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	M0S068	0.0	M0S068_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P15600_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-37	sequence-specific DNA binding transcription factors