PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P13300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 226aa MW: 25049.4 Da PI: 8.4028 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.2 | 8.3e-33 | 69 | 124 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e e GSMUA_Achr1P13300_001 69 VVKYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEAEG 124 589*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.1E-30 | 70 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-23 | 71 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-30 | 71 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.137 | 72 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 152 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.95E-20 | 153 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-28 | 158 | 214 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDLSGHEKEI PIPINSSYFG GHGQAPGHSS IHDTPPIHHS SNGTASPVST DTREDHHNAK 60 SFSTKKGVVV KYRECLKNHA ASIGGNATDG CGEFMPSGEE GTLEALKCSA CSCHRNFHRK 120 EAEGEPSMIM PLGAMQASES DEMEGVVGGV MARPPMVKKR FRTKFTPEQK EKMLSFAEKL 180 GWRLQKQEES MVQQFCQEIG VKRRVLKVWM HNNKHHLAKK TSLQLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-25 | 159 | 215 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403385.1 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_009403391.1 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018679591.1 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 2e-72 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | M0RZI8 | 1e-169 | M0RZI8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P13300_001 | 1e-169 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 7e-75 | homeobox protein 31 |