PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P10860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33343.3 Da PI: 5.415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.8e-53 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv++yL+kkv++++++ +++ evd+++ ePw+Lp+ +k + +ewyfFs rd+ky+tg+r+nratksgyWkatgk GSMUA_Achr1P10860_001 10 LPPGFRFHPSDQELVCHYLRKKVANERVSG-DTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYTTGSRTNRATKSGYWKATGK 96 79*************************999.88***************88888999******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v++ +++ vg++ktLvfy+grap+g kt+Wvmhe+rle GSMUA_Achr1P10860_001 97 DRTVYEPtTHAMVGMRKTLVFYRGRAPNGIKTEWVMHEFRLE 138 ******966778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.261 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-29 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFHPSD QELVCHYLRK KVANERVSGD TMVEVDLHTR EPWELPEVAK 60 LSANEWYFFS FRDRKYTTGS RTNRATKSGY WKATGKDRTV YEPTTHAMVG MRKTLVFYRG 120 RAPNGIKTEW VMHEFRLESP CTPPKEDWVL CRVFHKKKED TMRCSMENEQ ENNHNVGCFS 180 SYMESSHPQN EQQMEDGCYE QITSSFAFVD PQQDGNSLDT LLNLAAYHYN LLGFPQDMYN 240 TRIIEVGSGV GGDDYGMVVE TGLEEQRMLG GGMANLGEGT SFQGGKDQLF F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-52 | 1 | 159 | 1 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406045.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | F4HYV5 | 4e-62 | NAC26_ARATH; NAC domain-containing protein 26 | ||||
TrEMBL | M0RYU5 | 0.0 | M0RYU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P10860_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-84 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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