PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P10860_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 291aa    MW: 33343.3 Da    PI: 5.415
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P10860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-53101381129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhP+d+elv++yL+kkv++++++  +++ evd+++ ePw+Lp+ +k + +ewyfFs rd+ky+tg+r+nratksgyWkatgk
  GSMUA_Achr1P10860_001  10 LPPGFRFHPSDQELVCHYLRKKVANERVSG-DTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYTTGSRTNRATKSGYWKATGK 96 
                            79*************************999.88***************88888999******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d++v++  +++ vg++ktLvfy+grap+g kt+Wvmhe+rle
  GSMUA_Achr1P10860_001  97 DRTVYEPtTHAMVGMRKTLVFYRGRAPNGIKTEWVMHEFRLE 138
                            ******966778***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-618156IPR003441NAC domain
PROSITE profilePS5100559.26110156IPR003441NAC domain
PfamPF023657.2E-2911137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGLRDIESTL PPGFRFHPSD QELVCHYLRK KVANERVSGD TMVEVDLHTR EPWELPEVAK  60
LSANEWYFFS FRDRKYTTGS RTNRATKSGY WKATGKDRTV YEPTTHAMVG MRKTLVFYRG  120
RAPNGIKTEW VMHEFRLESP CTPPKEDWVL CRVFHKKKED TMRCSMENEQ ENNHNVGCFS  180
SYMESSHPQN EQQMEDGCYE QITSSFAFVD PQQDGNSLDT LLNLAAYHYN LLGFPQDMYN  240
TRIIEVGSGV GGDDYGMVVE TGLEEQRMLG GGMANLGEGT SFQGGKDQLF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5211591171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406045.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotF4HYV54e-62NAC26_ARATH; NAC domain-containing protein 26
TrEMBLM0RYU50.0M0RYU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P10860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-84NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]