PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P09570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 347aa    MW: 37607.7 Da    PI: 9.4662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P09570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09233281355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+++Er RR+ri +++  L+ l+P +    sk   Ka +L + ++Y++sLq
  GSMUA_Achr1P09570_001 233 NSHSIAERLRRERISERMKYLQNLVPGC----SKVTGKAVMLDEIINYVQSLQ 281
                            58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.69E-9228285No hitNo description
SuperFamilySSF474592.09E-17228299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17231297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7233281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASDENLTTS FVNRIPIGKP VVMSARGLFF PADSAFVERA AMFSHAGGHF SGIINSLASS  60
QPVVAPSCAD ISRDVIGSQL QKITLTVSEA KDASLPLPLD HESTSGSPIK NQRNKASAHL  120
TGGSQETRTG SAGAPGESCP SDLGAKKRKP IDPVSRSLFG SAVPTLVIIH EHHLLQDKER  180
GERARRWPRS SSRNAAEGIE AKQKQEPKHV DDGSEMPKED YVHVRARRGQ ATNSHSIAER  240
LRRERISERM KYLQNLVPGC SKVTGKAVML DEIINYVQSL QQQVEFLSMK LAAVNAQHNY  300
GMEELVAKEV RDISLSLQAG IVSSSSAKRL AVIGACFCLS STDAFLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396178.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLM0RYG60.0M0RYG6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P09570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-53bHLH family protein