PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P09180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 230aa    MW: 26196.7 Da    PI: 7.9236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P09180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv +++q+G ++W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr1P09180_001 14 KGPWTAEEDQVLVAYIQQHGHENWRALPKRAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding55.81e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr1P09180_001  67 RGNFTKEEEEAIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.564961IPR017930Myb domain
SuperFamilySSF466894.03E-3110108IPR009057Homeodomain-like
SMARTSM007173.4E-141363IPR001005SANT/Myb domain
PfamPF002498.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-251568IPR009057Homeodomain-like
CDDcd001678.86E-111661No hitNo description
PROSITE profilePS5129426.70962116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2769116IPR009057Homeodomain-like
CDDcd001671.23E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTAE EDQVLVAYIQ QHGHENWRAL PKRAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEEAIIK LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRVKPNQ  120
TVQESKRRSR SDVEATRSGA KAIDFQALQA ATRPKLESPT PLPVGETNSA GIKEEVVVSS  180
AHQFSDIDQN FWLDDSFASF CSSSNKDDDG IDFWLQVFME AGHLEELPEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0093261e-102AP009326.1 Musa balbisiana genomic DNA, BAC clone:MBP_94I16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392095.11e-169PREDICTED: myb-related protein Myb4
SwissprotQ7XBH41e-78MYB4_ORYSJ; Transcription factor MYB4
TrEMBLM0RYC71e-172M0RYC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P09180_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-78myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]