PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 359aa    MW: 39412.9 Da    PI: 8.9493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.3e-54231511128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+
  GSMUA_Achr1P08860_001  23 LPPGFRFHPTDEELVVHYLKKKAAAAPLPV-AIITEVDLYKFDPWELPGKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 109
                            79****************************.88***************999999********************************** PP

                    NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+vl++  ++ +vg+kk Lvfy+gr p+g+kt+W+mheyrl
  GSMUA_Achr1P08860_001 110 DKPVLTSggSQVKVGVKKALVFYRGRPPRGTKTNWIMHEYRL 151
                            ******9655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-6319195IPR003441NAC domain
PROSITE profilePS5100561.42123195IPR003441NAC domain
PfamPF023652.4E-2824151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEMENTDSSS GMKNQQELQH PQLPPGFRFH PTDEELVVHY LKKKAAAAPL PVAIITEVDL  60
YKFDPWELPG KANFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVLTSGGSQ  120
VKVGVKKALV FYRGRPPRGT KTNWIMHEYR LADGSSPENS SSSSCRPPYG GHMANKKKGG  180
SLRLDDWVLC RIYKKNNSVS DSLRPTHRDR EGATDDMLGS APSVAHQTGM QPQRAPTNYN  240
SLLEHDETFL EGLLANEVGL PTNSITHLAA AAARAKLNLS PRFHAGHGSG SNNAADKNNT  300
SSCSNGSATN DDGGHTNQML LNQIPYGTTY HDQMILGSLR DGGAIFQQPY QLPGVNWTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-7481982168NO APICAL MERISTEM PROTEIN
1ut4_B5e-7481982168NO APICAL MERISTEM PROTEIN
1ut7_A5e-7481982168NO APICAL MERISTEM PROTEIN
1ut7_B5e-7481982168NO APICAL MERISTEM PROTEIN
4dul_A5e-7481982168NAC domain-containing protein 19
4dul_B5e-7481982168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392346.20.0PREDICTED: NAC transcription factor NAM-B2-like
SwissprotA0SPJ91e-110NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLM0RY950.0M0RY95_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P08860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-91NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]