PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 664aa    MW: 73286.8 Da    PI: 7.1987
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.2e-21162263199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt sd++++g+ ++p++ ae+          ++ +  +l+ +d++g++W++++++r++++r++lt GW  Fv+a++L +gD+v+
  GSMUA_Achr1P08230_001 162 FRKTLTASDTSTHGCCSIPRRAAEKVfppldfsRDPPVQ--ELIAKDLHGNEWKFRHTFRGQPKRHLLTIGWTLFVNAKRLVAGDSVI 247
                            89*****************************96555555..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   g    el+++v+r+
  GSMUA_Achr1P08230_001 248 FIWYG--YSELLLGVRRA 263
                            *9544..44558888886 PP
2Auxin_resp1033.8e-34281364183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha++t+s F+  Y Pras+seFv++++k++ka+  +++ vGmRf+m fet +ss rr++G ++g+ dldpvrWpnS+Wrs+k
  GSMUA_Achr1P08230_001 281 AAHAVATNSSFTLSYFPRASPSEFVIPLSKYVKAVLrTRLLVGMRFRMLFETSESSVRRYMGKIIGIGDLDPVRWPNSHWRSVK 364
                            79*******************************98659*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-35147274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-35155271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-19161250No hitNo description
SMARTSM010191.8E-20162264IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534162264IPR003340B3 DNA binding domain
PfamPF023625.5E-19162263IPR003340B3 DNA binding domain
PfamPF065071.8E-29281364IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MKLCLLVART GRRVLAHQPF FCGAGILEES PPVLCWNLQL VDVRITANTP NYIIPLRLNS  60
ELWHACAGPL VSLPPVGSRV VYFPQGHSEL VAASTNRVTG SLPSFPSLPP HLVCQLHNVT  120
MLADEETDEV YAQMTLQALS PQNDLHLPTE LGTRSKHPTN YFRKTLTASD TSTHGCCSIP  180
RRAAEKVFPP LDFSRDPPVQ ELIAKDLHGN EWKFRHTFRG QPKRHLLTIG WTLFVNAKRL  240
VAGDSVIFIW YGYSELLLGV RRAQSPQRVA SADAVHVGLV AAHAVATNSS FTLSYFPRAS  300
PSEFVIPLSK YVKAVLRTRL LVGMRFRMLF ETSESSVRRY MGKIIGIGDL DPVRWPNSHW  360
RSVKVSWDEH AVGERQFRVS PWEIEPLPTF PMYPSPFPLG MKHSWPTAVP CHHGEDDDNV  420
DLASPLMCFQ NGGNLGFLSL NAHSSAAAPW MQPRFDAPML QAEMWPMAAA SGLLEKRVTD  480
AAKQASAATL QPQQTPTPLG QSLDHGGPPQ PPPPPAFLQI AQLNLEQILH QQAQQRSAAT  540
AAAVAPPVQS LLLPPPPPVG YADFSPSIPP LQSPYDTYTI LHNSTDATLP AYSLTYPIDL  600
TSEDILSLHP SFHSSLESLP PLESFGGTSS RTLLDLILHT SWQLNECSNL SFNQVRLHAH  660
VDPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1335838551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395459.20.0PREDICTED: auxin response factor 6-like
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0RY310.0M0RY31_MUSAM; Auxin response factor
STRINGGSMUA_Achr1P08230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]