PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 558aa    MW: 60575.4 Da    PI: 9.248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09412451448
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 
                            +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  A+
  GSMUA_Achr1P08130_001 412 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAT 451
                            799***********************5.....4899999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-37188341IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-12405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-10406447No hitNo description
PROSITE profilePS5088814.018408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-11411451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6412451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-6414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MLRDRRAPRL RLLRYMPLAY PSPSRDHPPL WPRRGCGREG GGKAPSGEAA SVCGVAALHQ  60
RVHKFLLGWE SVAARLPFLG GPPLLYLHLS FSTWHVLLLP PIYVLPPQRL QSLYRTSAIL  120
PPTPSLRPML VHYIANSLPT LRLTDVAHIR LHRSAADSDG GAARHLPLLL LLPPPPLSFH  180
QPAPATELQR RLQCLLQARP EWWAYAIFWR ASPDHRVLSF GDGHFRGARC PTDRRPRGCY  240
AADEAGADAV DDAEWFYIMS LSRSFVGGGA IPARVYGSLE LLWLTGAHAL QACGCDRSRE  300
AQLHGIQTLA CVPVPGGVLE LGSPDLIGDN WVLVHQAKAV FSEGPNDASP TAGAALAAVA  360
FPSPAVRKEG AGLSSSVDSE HSDSEGGTTV ERRRPKKRGR RPGSGSRDCT SNHVEAERQR  420
REKLNHRFYA LRSVVPNVSR MDKASLLADA TAADQAATSI TNAASATTGS PPTAVTVAIE  480
MEVKLLGNDA LIRVQSEDQN HPPAKLMCAL RDLELSVHHA SVSTLKDVVL QDVVVKVPTE  540
LQVEDTLRAA LLAILHKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-291883429193Transcription factor MYC3
4rqw_B2e-291883429193Transcription factor MYC3
4rs9_A2e-291883429193Transcription factor MYC3
4yz6_A2e-291883429193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392400RRPKKRGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393178.20.0PREDICTED: transcription factor MYC3-like
TrEMBLM0RY210.0M0RY21_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P08130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-22bHLH family protein