PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P07880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 408aa    MW: 46021.9 Da    PI: 9.6252
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P07880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-351372292103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g
  GSMUA_Achr1P07880_001 137 FLTKTYQLVDDPAVDDVVSWNEDGSTFVVWRPAEFASDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 215
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i+r+k++
  GSMUA_Achr1P07880_001 216 EKRLLQDIHRRKTS 229
                            ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-38127220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-57133226IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.89E-34134226IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-20137160IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-31137226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-20175187IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340176200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-20188200IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MFSVFFLTPS LFPSTSGRVH ASPAFHYLYA IIFAKDPPLP RLNPSYAATG THCRRTFEKR  60
NRIEASRSDP STESSFAVGS YSTYSITIPP LPTETIRKLQ DLSPVAFRTV KTRERRAKMT  120
LAAEPAEGQQ RSLPTPFLTK TYQLVDDPAV DDVVSWNEDG STFVVWRPAE FASDLLPKYF  180
KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRLL QDIHRRKTST AAPPLAPATI  240
PGTAHVRRAR SSTYSGEEQA ELGEENAWLR KENERLSREV AQMKKLCREI ATLISRHASG  300
RQERGEGSEV PPSQPGASPK LFGVSIGVKR PRLEDGDGPP VSQEVKTESV ESAWPNPKDV  360
SPERGGRQPW DILESCNIYI YIYISCLNSG TRSANAWERS HPFIYHAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-271162289131Heat shock factor protein 1
5d5v_B7e-271162289131Heat shock factor protein 1
5d5v_D7e-271162289131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986297e-97FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393520.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-77HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM0RXZ60.0M0RXZ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P07880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-66HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]