PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P07550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27755.8 Da PI: 10.1562 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 51 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++ +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr1P07550_001 51 KGAWTKEEDERLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 98 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 104 | 148 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++ GSMUA_Achr1P07550_001 104 RGNFTEDEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNHWNTH 148 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 42 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.644 | 46 | 98 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-29 | 50 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 50 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 51 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.41E-10 | 53 | 98 | No hit | No description |
PROSITE profile | PS51294 | 30.188 | 99 | 153 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-28 | 102 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-18 | 103 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 104 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-12 | 106 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSTKYTKVMD VFNVRERERE REREREKRER EEARGRNMGR SPCCEKAHTN KGAWTKEEDE 60 RLIAHIRAHG EGCWRSLPKA AGLLRCGKSC RLRWINYLRP DLKRGNFTED EDELIIKLHS 120 LLGNKWSLIA ARLPGRTDNE IKNHWNTHIR RKLLSRGVDP ATHRPSSVWQ QQTQRPDLNL 180 ELCISLPFQQ DPHELTKREK SLCFSCSLGL QNSKECKCRD FSGLSNGMLS YRGLKMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-31 | 50 | 153 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 26 | REREREREREREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393912.1 | 1e-142 | PREDICTED: myb-related protein Hv1-like | ||||
Swissprot | P20025 | 2e-98 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | M0RXW3 | 1e-174 | M0RXW3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P07550_001 | 1e-175 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-88 | myb domain protein 7 |
Publications ? help Back to Top | |||
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