PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P06360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 726aa    MW: 79534.7 Da    PI: 8.5948
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P06360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-152569147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT+eE+ ++++a k++G   W +I  ++g ++t+ q++s+ qk+
  GSMUA_Achr1P06360_001 25 REKWTEEEHNRFLEALKLYGRA-WQRIEDHIG-TKTAVQIRSHAQKF 69
                           789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-161975IPR009057Homeodomain-like
PROSITE profilePS5129420.2342074IPR017930Myb domain
TIGRFAMsTIGR015571.4E-162372IPR006447Myb domain, plants
SMARTSM007171.5E-122472IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-82565IPR009057Homeodomain-like
PfamPF002493.2E-132568IPR001005SANT/Myb domain
CDDcd001671.85E-92770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEGNSSGDEM VVVKTRKPYT ITKQREKWTE EEHNRFLEAL KLYGRAWQRI EDHIGTKTAV  60
QIRSHAQKFF TKLEKEALEK GIPIGQSHAI DIPPPRPKRK PSSPYPRKSS TCCLTPGETI  120
NGKSSRSMFL GANKVVDIKS GAPQEKFTAT QKLQNEEISE PSQSEVLNVF QDALSTSISS  180
VNKSSSNHSK YMEILPTDEK VDDKIASSKS SAPHEVDKEL KKNGKAFIGQ ETEGVQGNCT  240
KPHINLALDK GESASKLHGL TSKDSVKGDQ TQPRHTMGRN GARNMHTEDS DGQNPTSVTG  300
QVEGHANDIS SMNPEASAIP VQNISRVNSM HHPFPAFAPF THFHSSQDAY RSFLNISSTF  360
SSFILSTLLQ NPAVHAAARL AASSCPSAEV EASLQSTPVF MAGERHINPA PGLEAIAAVT  420
VAAAAAWWKA HGLLPWFPPA AFAFSPPNTT TIPSADTAQL HSHGCTLEKP LAEDQQIGKQ  480
NLYEDLKPPR HSSKSLSLSL SSSDSHDSGR GKNSSELEDS TSNKFKPLVA SGFDDSDNPR  540
NKKKQDRSSC GSNTPSSSEV ETDNAGKHEK VNDEAKEAYF NNSAACETNQ CRFRSSGHMN  600
ESWKAVSEDG RLAFQQLFKR EVLPQSFPPP LDIAAATTIK KGETSKLLVD LNKNICSATD  660
FNHLRGHTKE EVCIRSKDRI THGKLKFHQT GFKPYKRCSV EAKENRAAAE ENNGKKKMRL  720
QGEAST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395074.10.0PREDICTED: protein LHY
TrEMBLM0RXJ40.0M0RXJ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P06360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.44e-40MYB_related family protein