PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P05010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 369aa    MW: 41708.1 Da    PI: 9.1144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P05010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30130188259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++prsYYrC+++ gC+++k+ve+s+ dp ++ itY+ eHnh+
  GSMUA_Achr1P05010_001 130 SDLWAWRKYGQKPIKGSPYPRSYYRCSTSkGCQARKQVEQSRADPGMLLITYTAEHNHP 188
                            699***********************9988****************************8 PP
2WRKY1017.1e-32290348159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  GSMUA_Achr1P05010_001 290 LDDGYRWRKYGQKAVKNSVHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 348
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30115190IPR003657WRKY domain
PROSITE profilePS5081132.81124190IPR003657WRKY domain
SuperFamilySSF1182904.05E-26125190IPR003657WRKY domain
SMARTSM007741.6E-36129189IPR003657WRKY domain
PfamPF031062.3E-25131188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-32277348IPR003657WRKY domain
SuperFamilySSF1182904.84E-28283349IPR003657WRKY domain
PROSITE profilePS5081128.529285350IPR003657WRKY domain
SMARTSM007742.6E-37290349IPR003657WRKY domain
PfamPF031063.5E-25291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGDDNWDLYA VVRGCSAGTA VDVDDPLFSP FPPFLLQERD VGGEKERAFG FPELVGTSSY  60
PYGLHELCKP FYAMDLHQEP PLIPAVGDPR QSQRQSRQPQ RPVSQAPRSA RRKNQQKKVV  120
CQVAAHGVRS DLWAWRKYGQ KPIKGSPYPR SYYRCSTSKG CQARKQVEQS RADPGMLLIT  180
YTAEHNHPMP TIRNSLAGST RPKLPPPTSA DGDNRDQLLP PSPPSSPLAD SVEDELLLRR  240
PPRQGEEAEE EEEEDTLTTR YSGREAPSIL GAKVIRPRFA FQTRSPNDIL DDGYRWRKYG  300
QKAVKNSVHP RSYYRCTHHT CNVKKQVQRL SKDTSIVVTT YEGIHNHPCE KLMEALSPLL  360
KQIQFLTGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-22131347777Probable WRKY transcription factor 4
2lex_A6e-22131347777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386306.10.0PREDICTED: WRKY transcription factor 22 isoform X1
SwissprotO046095e-52WRK22_ARATH; WRKY transcription factor 22
TrEMBLM0RX590.0M0RX59_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P05010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.11e-52WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]