PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P04910_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26978.3 Da PI: 8.068 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.4e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ +++ +G +W + +++ g++R++k+c++rw++yl GSMUA_Achr1P04910_001 14 RGPWSPEEDAALKSYIQCHGAVgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89******************879************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + ++lG++ W+ Ia++++ gRt++++k++w++ GSMUA_Achr1P04910_001 69 GGFTEEEDSIICTLYHRLGSR-WSVIASHLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.696 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.87E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.129 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRAPCCDKA KVKRGPWSPE EDAALKSYIQ CHGAVGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDSIIC TLYHRLGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLMAR 120 RPCLPTTTTS DSKSPPLIGM PLHPNDGLSQ QSKKLYSDEE VSASSSSITA QHSSSFLNWS 180 TGGAESSDLF LSELGFGDAG DFLSSYGYQE RLGEEIPSYF SDPSQGMYQS LTYSLQSHAI 240 HEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 14 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 14 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387448.1 | 0.0 | PREDICTED: transcription factor RAX2 | ||||
Swissprot | Q9M2Y9 | 3e-69 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | M0RX49 | 0.0 | M0RX49_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P04910_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-71 | myb domain protein 84 |
Publications ? help Back to Top | |||
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