PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P04770_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 33143.8 Da PI: 7.1783 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.2e-33 | 171 | 228 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk vers +dp +v++tYeg+H+h+ GSMUA_Achr1P04770_001 171 EDGYRWRKYGQKAVKNSPFPRSYYRCTSPTCLVKKTVERSYQDPAIVVTTYEGKHTHH 228 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-34 | 155 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-29 | 162 | 230 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.135 | 165 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-39 | 170 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 171 | 228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSANDRELYF HDDFSFYAER DLSLLSGEMP SGAAIGTLQP LSPIMSFDDY LKLDAFDPGE 60 LASPELVADG AVNSTNNLTP STGCGAGTSP ASPSSSVPSS STEAAGEEDT SRRKKDHLKQ 120 EEEEIEMEQK LQSKADNDKS KKVSKPKKRG EKRRREPRFA FMTKSEVDHL EDGYRWRKYG 180 QKAVKNSPFP RSYYRCTSPT CLVKKTVERS YQDPAIVVTT YEGKHTHHSP APARGSTQSL 240 ASPPTASTSF RHHHHYHLMH QPNLHCFLQS PFQGFQFPDC DLLQDILPSF TQKSQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-29 | 160 | 231 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-29 | 160 | 231 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388415.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | M0RX35 | 0.0 | M0RX35_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P04770_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 3e-41 | WRKY DNA-binding protein 71 |