PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P04480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 187aa    MW: 20960.8 Da    PI: 8.1059
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P04480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY143.42.5e-4411491162
                  YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 
                            +d++s  e++Cyv+C++Cnt+lav vPs+ ++ +vtvrCGhC ++  ++ + + q  + ++           ++l+ ++  ++   ++
  GSMUA_Achr1P04480_001   1 MDLVSPMEHLCYVRCTYCNTVLAVGVPSKPMMDTVTVRCGHCNHVSFLSPRPMEQSHSPTN-----------HQLGLQGGCMDCLRSQ 77 
                            5788999***********************************9886655555544444444...........4677777777777666 PP

                  YABBY  89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                             + +s+s ss   s++++  ++++  v++PPek+ r+Psaynrf++eeiqrikas Pdi hreafs+a+knWa 
  GSMUA_Achr1P04480_001  78 PSPSSSSSSS--SSNSNEPTIQKPSFVVKPPEKKHRMPSAYNRFMREEIQRIKASKPDIPHREAFSMASKNWAK 149
                            6655555555..35666667777777**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-506150IPR006780YABBY protein
SuperFamilySSF470953.27E-898151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-5103151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDLVSPMEHL CYVRCTYCNT VLAVGVPSKP MMDTVTVRCG HCNHVSFLSP RPMEQSHSPT  60
NHQLGLQGGC MDCLRSQPSP SSSSSSSSSN SNEPTIQKPS FVVKPPEKKH RMPSAYNRFM  120
REEIQRIKAS KPDIPHREAF SMASKNWAKC DPRCSIIDDK LAPVPQVERS CSTMENSNFN  180
EQTEQKD
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391477.11e-137PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ01e-77YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0RX061e-136M0RX06_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P04480_0011e-137(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-48YABBY family protein