PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P03910_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 290aa MW: 32831 Da PI: 6.3044

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P03910_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.4	7.1e-36	30	120	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y++++d++++++isw+e+g++fvv+ + ef+ +vLp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g GSMUA_Achr1P03910_001 30 FLAKTYQLVDDPSIDDVISWNEDGSAFVVWRPAEFSLDVLPNYFKHNNFSSFVRQLNTYGFRKTVPDR---------WEFANECFRRG 108 9*************************************************************9999.........******* PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll++i+r+k GSMUA_Achr1P03910_001 109 EKRLLCEIQRRK 120 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.2E-38	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-56	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.6E-34	27	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.5E-32	30	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-20	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-20	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-20	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGPRTRAPRA PGEEAAEVAP DPQRTVPTPF LAKTYQLVDD PSIDDVISWN EDGSAFVVWR 60 PAEFSLDVLP NYFKHNNFSS FVRQLNTYGF RKTVPDRWEF ANECFRRGEK RLLCEIQRRK 120 FSGGDQVLFT NPSSGRVRLP AAAEGGSGGA SEIAEENERL RRENEQLSRE LDQTKGLCND 180 ILQLMSVYAP RRGNGEAADE GGASGRGEGP RLFGVSIGFK RNRGKEESAS DAVAEQDNLP 240 VRIIICSVEH LYFHYLLQSI FLMFQYCLIF IFFSLFNQSN FFLLIQIKKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	30	119	29	129	Heat shock factor protein 1
5d5v_B	2e-23	30	119	29	129	Heat shock factor protein 1
5d5v_D	2e-23	30	119	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101700	3e-80	AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBank	AY344484	3e-80	AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
GenBank	CT831026	3e-80	CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence.
GenBank	CU406354	3e-80	CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBank	CU406884	3e-80	CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391581.1	1e-149	PREDICTED: heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	2e-71	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	M0RWU9	0.0	M0RWU9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P03910_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	1e-54	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]