PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 344aa    MW: 38952.1 Da    PI: 9.825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-132064147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSMUA_Achr1P03720_001 20 RESWTEQEHDKFIEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 64
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-161470IPR009057Homeodomain-like
PROSITE profilePS5129415.6491569IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-71770IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-181867IPR006447Myb domain, plants
SMARTSM007173.6E-111967IPR001005SANT/Myb domain
PfamPF002491.9E-112064IPR001005SANT/Myb domain
CDDcd001671.52E-82265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSEDAAKKV RKPYTVTKSR ESWTEQEHDK FIEALQLFDR DWKKIEAFVG SKTVIQIRSH  60
AQKYFLKVQK NGTGAHVPPP RPKRKAAHPY PQKASKNVPL LVHPSTLQAS FLLEQGYGHG  120
ADSSTKSRNS FAGANYQYAD NKRSRGAIVV DNCHSNSTKS PRGSQPNYED NDKANQISSH  180
NGKNIMVPIP DIRRYSANIF VSENCSLISH DLVPVNMKQS AQGRYCRTWN FSSNQYVLTS  240
NPPKDHFMPD FVQIYNFLGS VFDPSTSCHL QKLKEMDPLD VQTVLLLMRN LSINLTNPDF  300
EDHVNLFSMT SFSVFRKLDL FISVHTSVTA MHIWSISFLL GNPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389765.11e-121PREDICTED: protein REVEILLE 6-like isoform X1
TrEMBLM0RWT00.0M0RWT0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.24e-66MYB_related family protein