PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 574aa    MW: 64132 Da    PI: 4.75
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-50151452128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            p GfrF+Ptd elv++yLk k++g+  +++evi+e+di+k+ePwdLp  + +k++++ew+fFs++d+ky++g+r+nratk+gyWkatg
  GSMUA_Achr1P03560_001  15 PLGFRFRPTDVELVNHYLKGKITGRIKSEDEVISEIDICKCEPWDLPdiSLIKSSDSEWFFFSPKDRKYPNGNRSNRATKAGYWKATG 102
                            89************************99999***************96448889999******************************* PP

                    NAM  88 kdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                            kd+ + s ++    +g+kktLvfy+grap+g++t+Wvmheyr 
  GSMUA_Achr1P03560_001 103 KDRMIRSISRVPtiIGTKKTLVFYQGRAPSGVRTTWVMHEYRT 145
                            *****996433355***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-565173IPR003441NAC domain
PROSITE profilePS5100556.16414173IPR003441NAC domain
PfamPF023655.9E-2615144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MVIREMAVLS VESFPLGFRF RPTDVELVNH YLKGKITGRI KSEDEVISEI DICKCEPWDL  60
PDISLIKSSD SEWFFFSPKD RKYPNGNRSN RATKAGYWKA TGKDRMIRSI SRVPTIIGTK  120
KTLVFYQGRA PSGVRTTWVM HEYRTTEKEL VLLFHFLSNP VQGGFVLCRL FKKPEEKTQI  180
SDIDDCTEGN VGEMESGDPS PAPAPAPGML SPVEMQQGVE ATVEVVSPLD HKLPGSYLQE  240
NLQPLPPTSD MQSSGVHELL EESHCSETVV SDPPCETLVG NEFGLRLDDL PQYLNPDFDK  300
LGGVDQEFPE FDYHSNSPRI TYTGHAFDAG VDWEFSSGLN QCDSVEDDSV TEFLDAVLCD  360
PYECSPEVSY VCRSLNTEFE PQGQICVSTD ETPWDSLSGK KSKRGSDKDD KATVLDDSIG  420
FSGEIYKLPV CSSTLSQKNS CIVPTRQHRI LVFPNHNLSQ NVSLMDSASA LHQETARMSN  480
CDKAGIQIST HNNLQELDCL IEPQSLLMRR LRLQKFVRKG SVPSTDQVLS TRNDVMKSAA  540
NEVREILKHQ FSEEQPVFSR IASTTSEGFS SHGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4341765171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686838.10.0PREDICTED: NAC domain-containing protein 14 isoform X3
TrEMBLM0RWR40.0M0RWR4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-69NAC transcription factor-like 9