PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P02820_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 372aa MW: 41752.8 Da PI: 5.3117

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P02820_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv +yLkkk++g++lel e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nrat+sgyWkat GSMUA_Achr1P02820_001 6 LPPGFRFHPTDEELVGYYLKKKINGHNLEL-EIIPEVDLYKCEPWELPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQSGYWKAT 92 79*************************9.99**********95334455777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl GSMUA_Achr1P02820_001 93 GKDRRVSS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ***9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.799	6	157	IPR003441	NAC domain
Pfam	PF02365	2.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAPVTLPPGF RFHPTDEELV GYYLKKKING HNLELEIIPE VDLYKCEPWE LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQSGYWK ATGKDRRVSS QRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDENECET TASGFQDSYA LCRVFKKSAP GPKILEHYGS SCKGSTELSP 180 TVNGNCYPFP PEICSSKMVQ GSSPNVSASA DVKWMQYLSP EAFTDAPPFL DPACFPYIPS 240 KVDIALECAR LQHRLSLPPL EMDDFSQNSL ADSNNASHLG GHQESASQAD VVLREILSVA 300 SASQEPTMCS SDYPNVFAGS STHFDEFACL LGLERRTEGM PFPEINDFGE ELKEEHKTAE 360 SSTDVRISEL SV

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAPVTLPPGF RFHPTDEELV GYYLKKKING HNLELEIIPE VDLYKCEPWE LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQSGYWK ATGKDRRVSS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDENECET TASGFQDSYA LCRVFKKSAP GPKILEHYGS SCKGSTELSP  180
TVNGNCYPFP PEICSSKMVQ GSSPNVSASA DVKWMQYLSP EAFTDAPPFL DPACFPYIPS  240
KVDIALECAR LQHRLSLPPL EMDDFSQNSL ADSNNASHLG GHQESASQAD VVLREILSVA  300
SASQEPTMCS SDYPNVFAGS STHFDEFACL LGLERRTEGM PFPEINDFGE ELKEEHKTAE  360
SSTDVRISEL SV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-58	1	163	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-58	1	163	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-58	1	163	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-58	1	163	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-58	1	163	12	171	NAC domain-containing protein 19
4dul_B	9e-58	1	163	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390804.2	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X1
Swissprot	Q9FFI5	1e-101	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	M0RWJ0	0.0	M0RWJ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P02820_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-119	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]