PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P02420_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 195aa    MW: 22465.1 Da    PI: 10.0517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P02420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++lv +++ +G g+W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr1P02420_001 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKKAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP

2Myb_DNA-binding55.81e-1767111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T+ Edel+++++  lG++ W++Ia +++ gRt++++k++w+++
  GSMUA_Achr1P02420_001  67 RGNFTEVEDELIINLHSHLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.758961IPR017930Myb domain
SuperFamilySSF466892.05E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001672.53E-101661No hitNo description
PROSITE profilePS5129426.41362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2765116IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002498.1E-1667111IPR001005SANT/Myb domain
CDDcd001673.44E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRSPCCEKA HINKGAWTKE EDDRLVAYIR AHGEGCWRSL PKKAGLLRCG KSCRLRWINY  60
LRPGLKRGNF TEVEDELIIN LHSHLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG  120
IDLEKHRLIH APIQKYRCPD LNLDLCLSPP PSRQQVEECT RCFSRCRGLQ PTRKKCKCDA  180
FLGLGSGSCR SLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413581.11e-133PREDICTED: myb-related protein Hv1-like
SwissprotP813935e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLM0RWF01e-140M0RWF0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P02420_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-82myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]