PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P02040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 612aa    MW: 68521.1 Da    PI: 5.2027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P02040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06129151326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            t +C ff++ G C  Gd C+F Hg
  GSMUA_Achr1P02040_001 129 TTPCYFFMK-GKCLKGDECPFRHG 151
                            89*******.***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6243564IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-123691No hitNo description
SMARTSM003560.00953663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7756692IPR000571Zinc finger, CCCH-type
SMARTSM003560.0336691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5120152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873126153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6126151IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6126152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MGRRPMSRFR QGRGAMSSRG GRIPSRPLAT NAESLKRNVD CFYFIASPTT CTKGSKCEYR  60
HSEGARFNPK DCLYWLKGNC LNPRCTFRHR PLESLFGNPR AMAVPAEPSS STAVQVADRP  120
PPNNINRNTT PCYFFMKGKC LKGDECPFRH GVGTPLDLHK DQQSTPSVSA VKAGQCRFQS  180
MEEALEYFKK DKELKGESSH DRIEDSDFFR DVDECAAAWL QRGRTLDFLD QCNDPQSDHQ  240
REKDQHTENR ESEMSGSLHG REQQKTSSEW TLDISMLEKG KLREESYDEL DDEPVPRSET  300
DQHRGLHGRD EKLLEGPSMR TKSKPREESN DELDPCDLRH QLPRVRRPKD SGRVSDPDDR  360
GSHRYVHDDS SHAQHSQWDR QSLGRGRSKS IISLPTKSSP DRPTGWPSAI DTDGERKRRR  420
LSPAMLMNDQ ESCARLDADS SSGARRTSGG RTAGKDVAYP SDFPGPKSLA ELRGAKASQT  480
SYDEKRLSSS ETADHQEYGS SLSFEGPLPL SVILQRKREA APEKSAISSN GEGDNQGDAD  540
DHSWDPAEDG GNVPEASKGT TVDEEEEEGR IAKELLDGAD EVVNYEEAAE GEDNEYEVDE  600
DDFVKMVGDL LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415419RKRRR
2416420KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413921.20.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBLM0RWB20.0M0RWB2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P02040_0010.0(Musa acuminata)