PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P01660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 322aa    MW: 35768.5 Da    PI: 4.9865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P01660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-143984146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           +g W +eEde+l ++v+++G+++W++I ++  + Rt+k+c++rw +
  GSMUA_Achr1P01660_001 39 KGTWMAEEDEILMEYVRKHGPRDWSSIRSKGLLARTGKSCRLRWVN 84
                           799************************888779***********87 PP
2Myb_DNA-binding45.51.8e-1495135345
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++++eE+ + +d+ +++G++ W++Ia +++ gRt++++k++w 
  GSMUA_Achr1P01660_001  95 KFSPEEERIVLDLQAKFGNK-WARIATYLP-GRTDNDVKNFWS 135
                            79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8453486IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-203687IPR009057Homeodomain-like
SuperFamilySSF466891.02E-2737134IPR009057Homeodomain-like
SMARTSM007175.4E-103888IPR001005SANT/Myb domain
PfamPF002491.6E-123984IPR001005SANT/Myb domain
CDDcd001672.69E-114186No hitNo description
PROSITE profilePS5129421.10787142IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-1988140IPR009057Homeodomain-like
SMARTSM007175.2E-1392140IPR001005SANT/Myb domain
PfamPF002495.4E-1395135IPR001005SANT/Myb domain
CDDcd001671.44E-1195134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MHAYNRLVVV VMDNERYSVE GGGGGGVPDI TTLGMAIRKG TWMAEEDEIL MEYVRKHGPR  60
DWSSIRSKGL LARTGKSCRL RWVNKLKPDL KTGCKFSPEE ERIVLDLQAK FGNKWARIAT  120
YLPGRTDNDV KNFWSTRQKR LARISRSSLP PRSSKNDKEL PAVSSYEAPP NMEVSLRSSN  180
VQCGTALYVD NQYAMSMAPS PCNLGLGTAL PPLLEPATEE ELLRLPNTSM PPQPPPPQQH  240
IGPLPQPSLD YLDHFTGEEI CFSEEFGCQG SSPCMQFLYD GSPFAREDEQ PPAPDSLFDD  300
LPSDLFDYLE PPPPPPPTSS AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-26391404103C-Myb DNA-Binding Domain
1msf_C2e-26391404103C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406212.20.0PREDICTED: myb-related protein 330
TrEMBLM0RW740.0M0RW74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P01660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-58MYB family protein