PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P26450_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36449.9 Da PI: 7.3206 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.5e-49 | 16 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ ++kew+f+++rd+ky++g+r+nr+++sgyWkatg GSMUA_Achr11P26450_001 16 MPGFRFHPTEEELIEFYLRRKVEGKRFSV-ELITYLDLYRYDPWELPALATIGDKEWFFYVPRDRKYRNGDRPNRVATSGYWKATGA 101 79***************************.89***************888889**********************999********* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ ++++ +glkktLvfy+g+apkg +t+W+m+eyrl GSMUA_Achr11P26450_001 102 DRTIRTENHPSIGLKKTLVFYSGKAPKGIRTSWTMNEYRL 141 ******9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.471 | 15 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-54 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-24 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MRGEDDKDGH EHDLVMPGFR FHPTEEELIE FYLRRKVEGK RFSVELITYL DLYRYDPWEL 60 PALATIGDKE WFFYVPRDRK YRNGDRPNRV ATSGYWKATG ADRTIRTENH PSIGLKKTLV 120 FYSGKAPKGI RTSWTMNEYR LPHGETDPYM RTEISLCRVY KRVAVEDRRR LPGTLASEPS 180 RSRESRMEKE HFFCSSTPVT EMTPQAPGGA PSNNLSSPVL STLYSTTDSI ASLSSTTSTE 240 EHKSRLHQYS KNSVSVLVPA NSLLTSTLGI EELNKLASYG RSLMNQPSQH LPVISAENIW 300 EDWWNPLPEV GKDYSGFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-54 | 17 | 162 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-54 | 17 | 162 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-54 | 17 | 162 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-54 | 17 | 162 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-54 | 17 | 162 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-54 | 17 | 162 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385308.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 9e-95 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | M0RVM5 | 0.0 | M0RVM5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P26450_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 7e-97 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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