PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P26100_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 1026aa MW: 112964 Da PI: 7.4874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P26100_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	869	890	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg +F+ +++L+ H+ H GSMUA_Achr11P26100_001 869 QCHKCGLRFRLQEQLQWHLDWH 890 8*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48464	3.4E-38	72	194	IPR008942	ENTH/VHS
PROSITE profile	PS51391	38.851	73	201	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	1.1E-42	74	195	IPR008942	ENTH/VHS
SMART	SM00582	2.8E-42	76	198	IPR006569	CID domain
CDD	cd03562	5.89E-37	80	189	No hit	No description
Pfam	PF04818	5.0E-10	129	185	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	9.286	868	895	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	870	890	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence Send to blast
MESSRRSAMD RSREPGSKRP RLVAEDAVVR DRAAFDRDRL IPPARAGNQP LVSRLPRARE 60 RQERDDAAAP VGSHQELVSQ YRTALAELTF NSKPIITNLT IIAGESLHAA KEIAAVICAN 120 VLEVATEQKL PSLYLLDSIV KNIGRDYIRY FASRLPEVFC KAYKQVDSSI RPSMRHLFGT 180 WRGVFPPASL QLIEKELGFP PVINVSSGSV SSKLDSQPQR PAHSIHVNPK YLEARQKLHS 240 SRVSQPLMIS DIMVSGVVST FDDAESSDKI VMAGKSRQWT NLPTKMPNMQ HSQRVTVNNV 300 INEKKGLKDA RDHEYSSDIS READLGIPRV SERLKDQDGH GKPYYGVGIT ATQAQLSERN 360 GFDVNHSYGT YGKSGPMRAN SQQTSVCDTD RMKLESSRSW KNSEEEEYMW DDIKTRPTDY 420 GGTNNSIKGG WTSGNADKSA SLQRGKWIPL ETEHAKTNLN TVDAFSHLVE TSKTESRIPL 480 FKDFGEHILP SRAKHETDSV LKTSSNSLLQ QRASSENSSS FWSRRDVPAS EVGINDKSSR 540 VGQQLIPSGG GLSTHDNSSL PLPGLQSSVL SSRLSPHANT PVPGATSEQQ RQHLSQPPLS 600 LSSHLPPPEP IQHLKPHDLT DQNLLLFNSL SQVGRKPLQP VGSLDIFPVK NRAQPFDTQT 660 QPSLKIKTQS QPSHQTEKLP PLPMDLGIHQ TGKDSGRSMS HANNPVVEAS SQSSTSSLLA 720 AIMNSGLFSN NSVSNFQKMS VQPPLPNSKT SGPTLSPLSG ILSSLVAKGL IASPPTVLTT 780 TSAAQLPDKV RDQCTNNSLE QVSLSLTTPG VAPPLEDQPA ASVSTASAGL VQSSATELKE 840 HLGTEFKSEI IRGSHPSVVR SLFDDLKLQC HKCGLRFRLQ EQLQWHLDWH VSKESETSNF 900 NGRSRKWFSD MRYQQSSSEV AISLEEVGSS EKDSELMVPA DESQSICALC GEPFEDVYSE 960 VRDEWMYKGT VYLDLSKKQD DASNTNGTPG QLLIVHAHCM SQRFCQNMDV AEHDKVDQTH 1020 VPIGLF

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence Send to blast

MESSRRSAMD RSREPGSKRP RLVAEDAVVR DRAAFDRDRL IPPARAGNQP LVSRLPRARE  60
RQERDDAAAP VGSHQELVSQ YRTALAELTF NSKPIITNLT IIAGESLHAA KEIAAVICAN  120
VLEVATEQKL PSLYLLDSIV KNIGRDYIRY FASRLPEVFC KAYKQVDSSI RPSMRHLFGT  180
WRGVFPPASL QLIEKELGFP PVINVSSGSV SSKLDSQPQR PAHSIHVNPK YLEARQKLHS  240
SRVSQPLMIS DIMVSGVVST FDDAESSDKI VMAGKSRQWT NLPTKMPNMQ HSQRVTVNNV  300
INEKKGLKDA RDHEYSSDIS READLGIPRV SERLKDQDGH GKPYYGVGIT ATQAQLSERN  360
GFDVNHSYGT YGKSGPMRAN SQQTSVCDTD RMKLESSRSW KNSEEEEYMW DDIKTRPTDY  420
GGTNNSIKGG WTSGNADKSA SLQRGKWIPL ETEHAKTNLN TVDAFSHLVE TSKTESRIPL  480
FKDFGEHILP SRAKHETDSV LKTSSNSLLQ QRASSENSSS FWSRRDVPAS EVGINDKSSR  540
VGQQLIPSGG GLSTHDNSSL PLPGLQSSVL SSRLSPHANT PVPGATSEQQ RQHLSQPPLS  600
LSSHLPPPEP IQHLKPHDLT DQNLLLFNSL SQVGRKPLQP VGSLDIFPVK NRAQPFDTQT  660
QPSLKIKTQS QPSHQTEKLP PLPMDLGIHQ TGKDSGRSMS HANNPVVEAS SQSSTSSLLA  720
AIMNSGLFSN NSVSNFQKMS VQPPLPNSKT SGPTLSPLSG ILSSLVAKGL IASPPTVLTT  780
TSAAQLPDKV RDQCTNNSLE QVSLSLTTPG VAPPLEDQPA ASVSTASAGL VQSSATELKE  840
HLGTEFKSEI IRGSHPSVVR SLFDDLKLQC HKCGLRFRLQ EQLQWHLDWH VSKESETSNF  900
NGRSRKWFSD MRYQQSSSEV AISLEEVGSS EKDSELMVPA DESQSICALC GEPFEDVYSE  960
VRDEWMYKGT VYLDLSKKQD DASNTNGTPG QLLIVHAHCM SQRFCQNMDV AEHDKVDQTH  1020
VPIGLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2bf0_X	2e-16	69	197	1	140	PCF11
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385086.1	0.0	PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform X1
Refseq	XP_018676524.1	0.0	PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform X1
TrEMBL	M0RVJ0	0.0	M0RVJ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P26100_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8