PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P25770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 913aa    MW: 101629 Da    PI: 6.3461
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P25770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24128229199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  GSMUA_Achr11P25770_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 212
                             99*****************************8544444..48********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  GSMUA_Achr11P25770_001 213 LFI--WNDNNQLLLGIRRA 229
                             ***..7777778***9997 PP
2Auxin_resp121.37.3e-40254337183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GSMUA_Achr11P25770_001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVHhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                             79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-43121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-22127228No hitNo description
SMARTSM010191.5E-25128230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267128230IPR003340B3 DNA binding domain
PfamPF023625.4E-23128229IPR003340B3 DNA binding domain
PfamPF065078.9E-35254337IPR010525Auxin response factor
SuperFamilySSF542773.73E-7773855No hitNo description
PfamPF023091.2E-6777866IPR033389AUX/IAA domain
PROSITE profilePS5174522.209780864IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MRLSSGGLGN QQNEEAEEQV CLNSELWHAC AGPLVSLPSV GSRVVYFPQG HSEQVAASTN  60
KEFDSLPSYP SLPPQLVCQL HNVTMHADVE TDEVYGQMTL QPLSPQEQKD PYLITEMGTP  120
CKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA KDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVHH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL  360
TTFPMYPSPF PFRLKRPWPT GLPSLYGGKD DISLNSPLLW LQNGGNTGLQ SLNFQGIGVT  420
PWTQPNFDTP ILGLQPGMYQ AMAAAGLQET RTTETTKLIS PSVLPFQQTQ NITTRTSPML  480
PSQVLEHGQS QPPQTFLQDI QINQVQSQSQ AEFLQHQLRQ EYSFGEQQHQ QEISQQQLPQ  540
QKQTLHHQQI QQQKFLSTQQ VCTGMSALPE LISESQSPST ALQNILSFSQ SQNFSNSNGN  600
FVRTSNASSL HDILHQLSPE DASNLHSWSR GNQVFTSSPW PSKRVAIESM LPSGDQCVLP  660
RVEQSGVSQP NIAQRSVTLP PFPGRECMVD QDGNVDGQNH LLFGVNIDSS PLLVQNGMAN  720
LSNIRNETDS MNIRYAASNF VASSGNDFAL NQTLTGSNSL EEAGFLHSPE NVDSLNPKSR  780
TSVKVYKSGS LGRSLDIAKF SSYHELRSEL GHLFGLEGQL EDPLRSGWQL VFVDRENDIL  840
LVGDDPWQEF VNSVWCIKIL SPQEVQQMGK QSVEFLNSTC IKRLPNNSCD DYINRQDSRT  900
VSTGIASVGT LEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561235841388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385053.10.0PREDICTED: auxin response factor 6-like isoform X1
RefseqXP_009385054.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM0RVF70.0M0RVF7_MUSAM; Auxin response factor
STRINGGSMUA_Achr11P25770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]