PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P25720_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 279aa    MW: 31294.3 Da    PI: 8.2786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P25720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50111411128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                             lppGfrFhP+deelv++yL kkv    +  +     ++ +vd++k+ePw+Lp+++    kewyfFs  d+kyatg+r+nrat+sgyW
  GSMUA_Achr11P25720_001  11 LPPGFRFHPRDEELVCDYLMKKVFCGGNGGDGgcwpMMIDVDLNKCEPWELPEMACVAGKEWYFFSLPDRKYATGQRTNRATQSGYW 97 
                             79********************98887444224444799*************76666889*************************** PP

                     NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             katgkd++v + +g lvgl+ktLvfy+grapkg+kt+Wvmhe+r+
  GSMUA_Achr11P25720_001  98 KATGKDRQVSR-RGVLVGLRKTLVFYRGRAPKGRKTEWVMHEFRM 141
                             *********99.99*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-603165IPR003441NAC domain
PROSITE profilePS5100555.60611165IPR003441NAC domain
PfamPF023657.6E-2612141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSFLSMMEAR LPPGFRFHPR DEELVCDYLM KKVFCGGNGG DGGCWPMMID VDLNKCEPWE  60
LPEMACVAGK EWYFFSLPDR KYATGQRTNR ATQSGYWKAT GKDRQVSRRG VLVGLRKTLV  120
FYRGRAPKGR KTEWVMHEFR MADSDDPPQK FSSKDDWVLC RVFHKSRGVA SKPTAETGDD  180
EAVSSSLPPL TDGHIALEQA PLGSRGYDQV SCFSDLNPHS ASHANDAAYP PLSAVERSHQ  240
LKSSTLGYPK REFPPNTSAP RSLDSHFTGN GLSYVWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47616612166NO APICAL MERISTEM PROTEIN
1ut4_B1e-47616612166NO APICAL MERISTEM PROTEIN
1ut7_A1e-47616612166NO APICAL MERISTEM PROTEIN
1ut7_B1e-47616612166NO APICAL MERISTEM PROTEIN
4dul_A1e-47616612166NAC domain-containing protein 19
4dul_B1e-47616612166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385050.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE66e-85NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0RVF20.0M0RVF2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P25720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-87NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]