PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P25720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31294.3 Da PI: 8.2786 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+deelv++yL kkv + + ++ +vd++k+ePw+Lp+++ kewyfFs d+kyatg+r+nrat+sgyW GSMUA_Achr11P25720_001 11 LPPGFRFHPRDEELVCDYLMKKVFCGGNGGDGgcwpMMIDVDLNKCEPWELPEMACVAGKEWYFFSLPDRKYATGQRTNRATQSGYW 97 79********************98887444224444799*************76666889*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd++v + +g lvgl+ktLvfy+grapkg+kt+Wvmhe+r+ GSMUA_Achr11P25720_001 98 KATGKDRQVSR-RGVLVGLRKTLVFYRGRAPKGRKTEWVMHEFRM 141 *********99.99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-60 | 3 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-26 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSFLSMMEAR LPPGFRFHPR DEELVCDYLM KKVFCGGNGG DGGCWPMMID VDLNKCEPWE 60 LPEMACVAGK EWYFFSLPDR KYATGQRTNR ATQSGYWKAT GKDRQVSRRG VLVGLRKTLV 120 FYRGRAPKGR KTEWVMHEFR MADSDDPPQK FSSKDDWVLC RVFHKSRGVA SKPTAETGDD 180 EAVSSSLPPL TDGHIALEQA PLGSRGYDQV SCFSDLNPHS ASHANDAAYP PLSAVERSHQ 240 LKSSTLGYPK REFPPNTSAP RSLDSHFTGN GLSYVWNPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 6 | 166 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 6 | 166 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 6 | 166 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 6 | 166 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-47 | 6 | 166 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 6 | 166 | 12 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385050.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like isoform X2 | ||||
Swissprot | Q84TE6 | 6e-85 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0RVF2 | 0.0 | M0RVF2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P25720_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-87 | NAC domain containing protein 1 |